PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G27370.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 1850aa MW: 205789 Da PI: 5.1823

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G27370.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	4.9e-19	59	113	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ + +++yp++++r+eL+ klgLt+rq ++WF+ rR k++k OGLUM05G27370.1 59 KRVMKTPYQLEVLERTYTEDPYPNETMRAELSVKLGLTDRQLQMWFCHRRLKDRK 113 8999*************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1850 aa Download sequence
MDSSGDGGDE GAGAAPAGVE EESPAPASPP APAPASASAP VPAAVGGGAG ASGSSGKVKR 60 VMKTPYQLEV LERTYTEDPY PNETMRAELS VKLGLTDRQL QMWFCHRRLK DRKPPPKRQQ 120 LEEEVPVPVM APPPVLPPPL PHSELTMGTG GMYGEPLLPP SSRRGTGRPS AVPRISASEV 180 ARRYYEPPQV MLPPLAPMQL TRAEHRVIDS VERLIGEPLR EDGPVLGVEF DPLPPGAFGA 240 PIVPEQQRQP FRSYEAKMFS GHDTKHIKAS AFLPSIDPFV PSTVSGKRKS MTGSSSHLGS 300 RAVREYQFIP EQSSDIYERT TQSRYYDVST EASDSRMSTG SRFLHGVEKA PGYTFHGQIS 360 GSSHLSLHGR PPVFSSGSTD YEMDPSNINS SSVPNESQYG IPQVAGFENS IAPSDRMVYH 420 DDDAFRMERK RKHSEEAKIA KEVEAHEKRI RKELEKQDML NRKREEQVRR EMERNDRERK 480 KEEERLLREK QKEEERFQRE QRREHKRMEK YLLKQSLRAE KIRQKEELRK EKEAARQKAA 540 NERATARRIA REYMELMEDE RLELMELVSR SKGLPSMLSL DSDTLQQLDS FRGMLRQFPS 600 EIVRLKVPFS IKPWTSSEDN IGNLLMVWKF FITFADVLGI PSFTLDEFVQ SLHDYDSRLL 660 GELHVALLKS IIKDIEDVAR TPSVASGMTA NPGGGHPQIV EGAYDWGFNI LAWQRHLNLL 720 TWPEILRQFG LSAGLGPQLR KRNAENVNNH DDNEGRNGED VISILRSGSA AVNAAAKMKE 780 RGYGNRRRSR HRLTPGTVKF AAFHVLSLEG SQGLTILEVA EKIQKSGLRD LTTSKTPEAS 840 ISAALSRDSK LFERTAPSTY CVKTPYRKDP ADSEAVLAAA REKIRVFQNT ISECEEVEKD 900 VDDAERDEDS ECDDADDDPD GDEVNIEEKD VKAPLVKAQD GGMPTAVGDI KKETNSIVNS 960 LTTPLIHTKS SESSSLRTLD KSVQVRTTSD LPAEISSDNH EGASDSAQDA EIDESNQGES 1020 WVQGLAEGDY CDLSVEERLN ALVALIGVAT EGNSIRAVLE ERLEAASALK KQMWAEAQLD 1080 KRRSREEFSS KMQYDSGMGL KTDVDQQNTL AESNLTPVHN LVKDSNGNGS LVNNELPVDQ 1140 QSQPNACSVV HERNGVRQEF SANPENLSGQ QYVTSEKTRS QLKSYIGHKA EQLHVYRSLP 1200 LGQDRRRNRY WQFSTSASPD DPGSGRIFFE SRDGYWRLID SIETFDALVS SLDTRGIRES 1260 HLHSMLQSIE PTFKEAIGRK RCASIEPSAG RVLKNGTSEI ISPNHSNEFG SPCSTLSGVA 1320 TDSAMAYSDS FRIELGRNDV EKTAISERAD LFIKWMWKEC NNHQPTCAMK HGKKRCSELI 1380 QCCDFCYQIY LAEETHCASC HKTFKSIHNI SEHSSQCEEK RRTDPNWKMQ ISDDSVPVGL 1440 RLLKLLLATV EASVPAEALE PFWTDVYRKS WGVKLYSTSS TKEVFEMLTI LEGAIRRDFL 1500 SSDFETTTEL LNLSTQDSAS RNFPRSGSAD VLPWVPDTVA AVVLRLLDLD SAISYTLRQK 1560 VGSNKERGAG EFMKLPPRYT PAKTKQETEP MGTGFDRQET WLTPSNGRGC RGGRGRGSRG 1620 GSRGGRSRSR GGKVPRGISS SPKIEFRGYS ASAVSSEKAP RKYARRGRNR GRGRGLRTVR 1680 PRQPSDIGAR SIPKPNLLGS FSMLRNAKHT TAMESPQSSG AEEWGLERRP SYVKDGEDNS 1740 ASQSEESSEE NSEPMNEEYD EPLPDYSRDN SGSSPLQMMD DGSDDNEEDA EGDEDGEDYD 1800 AEQHVDEDND DAEMGEDDVE DNDDGDGGGG GAENGDEDED GTSYSSEYSE

Sequence ? help Back to Top

Protein Sequence Length: 1850 aa Download sequence

MDSSGDGGDE GAGAAPAGVE EESPAPASPP APAPASASAP VPAAVGGGAG ASGSSGKVKR  60
VMKTPYQLEV LERTYTEDPY PNETMRAELS VKLGLTDRQL QMWFCHRRLK DRKPPPKRQQ  120
LEEEVPVPVM APPPVLPPPL PHSELTMGTG GMYGEPLLPP SSRRGTGRPS AVPRISASEV  180
ARRYYEPPQV MLPPLAPMQL TRAEHRVIDS VERLIGEPLR EDGPVLGVEF DPLPPGAFGA  240
PIVPEQQRQP FRSYEAKMFS GHDTKHIKAS AFLPSIDPFV PSTVSGKRKS MTGSSSHLGS  300
RAVREYQFIP EQSSDIYERT TQSRYYDVST EASDSRMSTG SRFLHGVEKA PGYTFHGQIS  360
GSSHLSLHGR PPVFSSGSTD YEMDPSNINS SSVPNESQYG IPQVAGFENS IAPSDRMVYH  420
DDDAFRMERK RKHSEEAKIA KEVEAHEKRI RKELEKQDML NRKREEQVRR EMERNDRERK  480
KEEERLLREK QKEEERFQRE QRREHKRMEK YLLKQSLRAE KIRQKEELRK EKEAARQKAA  540
NERATARRIA REYMELMEDE RLELMELVSR SKGLPSMLSL DSDTLQQLDS FRGMLRQFPS  600
EIVRLKVPFS IKPWTSSEDN IGNLLMVWKF FITFADVLGI PSFTLDEFVQ SLHDYDSRLL  660
GELHVALLKS IIKDIEDVAR TPSVASGMTA NPGGGHPQIV EGAYDWGFNI LAWQRHLNLL  720
TWPEILRQFG LSAGLGPQLR KRNAENVNNH DDNEGRNGED VISILRSGSA AVNAAAKMKE  780
RGYGNRRRSR HRLTPGTVKF AAFHVLSLEG SQGLTILEVA EKIQKSGLRD LTTSKTPEAS  840
ISAALSRDSK LFERTAPSTY CVKTPYRKDP ADSEAVLAAA REKIRVFQNT ISECEEVEKD  900
VDDAERDEDS ECDDADDDPD GDEVNIEEKD VKAPLVKAQD GGMPTAVGDI KKETNSIVNS  960
LTTPLIHTKS SESSSLRTLD KSVQVRTTSD LPAEISSDNH EGASDSAQDA EIDESNQGES  1020
WVQGLAEGDY CDLSVEERLN ALVALIGVAT EGNSIRAVLE ERLEAASALK KQMWAEAQLD  1080
KRRSREEFSS KMQYDSGMGL KTDVDQQNTL AESNLTPVHN LVKDSNGNGS LVNNELPVDQ  1140
QSQPNACSVV HERNGVRQEF SANPENLSGQ QYVTSEKTRS QLKSYIGHKA EQLHVYRSLP  1200
LGQDRRRNRY WQFSTSASPD DPGSGRIFFE SRDGYWRLID SIETFDALVS SLDTRGIRES  1260
HLHSMLQSIE PTFKEAIGRK RCASIEPSAG RVLKNGTSEI ISPNHSNEFG SPCSTLSGVA  1320
TDSAMAYSDS FRIELGRNDV EKTAISERAD LFIKWMWKEC NNHQPTCAMK HGKKRCSELI  1380
QCCDFCYQIY LAEETHCASC HKTFKSIHNI SEHSSQCEEK RRTDPNWKMQ ISDDSVPVGL  1440
RLLKLLLATV EASVPAEALE PFWTDVYRKS WGVKLYSTSS TKEVFEMLTI LEGAIRRDFL  1500
SSDFETTTEL LNLSTQDSAS RNFPRSGSAD VLPWVPDTVA AVVLRLLDLD SAISYTLRQK  1560
VGSNKERGAG EFMKLPPRYT PAKTKQETEP MGTGFDRQET WLTPSNGRGC RGGRGRGSRG  1620
GSRGGRSRSR GGKVPRGISS SPKIEFRGYS ASAVSSEKAP RKYARRGRNR GRGRGLRTVR  1680
PRQPSDIGAR SIPKPNLLGS FSMLRNAKHT TAMESPQSSG AEEWGLERRP SYVKDGEDNS  1740
ASQSEESSEE NSEPMNEEYD EPLPDYSRDN SGSSPLQMMD DGSDDNEEDA EGDEDGEDYD  1800
AEQHVDEDND DAEMGEDDVE DNDDGDGGGG GAENGDEDED GTSYSSEYSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G27370.1