PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G27750.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 85aa    MW: 9778.77 Da    PI: 5.8869
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G27750.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-071260146
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +  W+  E + + +a + +G +   +W+++a+ mg  +++++++ ++ +
  OGLUM05G27750.1 12 KSEWSRKENKMFEEALAYYGEDtpnRWDKVASAMGGIKSAEEIRCHYED 60
                     578********************************668******99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    
MSGSRSSSPN SKSEWSRKEN KMFEEALAYY GEDTPNRWDK VASAMGGIKS AEEIRCHYED  60
LTDDVKTIES GRVQFPKYKT QGYWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-22MYB_related family protein