PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G28390.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 556aa MW: 64173.3 Da PI: 8.855

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G28390.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.1	2.6e-07	495	521	28	54
HHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRak 54 ++++eLA++l+L +qV WF NrR + OGLUM05G28390.1 495 KQKKELADRLNLRISQVDAWFRNRRLR 521 789**********************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence
MGGRARSILR WLRHHRSRRV SSSSFHLTTT GDDTVKDLHD PRREDAEGDG WEEVHEGPES 60 DPEEYIALVS EDAGTHLPVR TEPRRMDPSK KEPDFFTEYG EANRYKVSEV IGKGSYGVVA 120 AAVDTQTGER VAIKKINDVF DHVSDATRIL REIKLLRLLR HPDIVEIKHI MLPPSRREFR 180 DIYVIKANDD LTPEHHQFFL YQLLRGMKYI HAASVFHRDL KPKNILANAD CKLKVCDFGL 240 ARVSFNDTPS AIFWTDYVAT RWYRAPELCG SFFSKYTPAI DIWSVGCIFA ELLTGKPLFP 300 GKNVVHQLDL MTDLLGTPSA ESLAKIRNEK ARRYLSNMRK KPRVPFTKKF PGVDPMALHL 360 LERLLAFDPK DRPSAEEALT DPYFNGLANS EREPIAQPIS KLEFEFEKRK LAKDDVRELI 420 YREILEYHPH MLQEYLRGGD QMSFMYPSGV DRFKRQFAHL EEGVSKGEKS SPQLRQNASL 480 PSHLRSRKLM EHFQKQKKEL ADRLNLRISQ VDAWFRNRRL RIVIERNLEL GGIAIDHCEI 540 ESGQMTKINS ARCDVL

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence

MGGRARSILR WLRHHRSRRV SSSSFHLTTT GDDTVKDLHD PRREDAEGDG WEEVHEGPES  60
DPEEYIALVS EDAGTHLPVR TEPRRMDPSK KEPDFFTEYG EANRYKVSEV IGKGSYGVVA  120
AAVDTQTGER VAIKKINDVF DHVSDATRIL REIKLLRLLR HPDIVEIKHI MLPPSRREFR  180
DIYVIKANDD LTPEHHQFFL YQLLRGMKYI HAASVFHRDL KPKNILANAD CKLKVCDFGL  240
ARVSFNDTPS AIFWTDYVAT RWYRAPELCG SFFSKYTPAI DIWSVGCIFA ELLTGKPLFP  300
GKNVVHQLDL MTDLLGTPSA ESLAKIRNEK ARRYLSNMRK KPRVPFTKKF PGVDPMALHL  360
LERLLAFDPK DRPSAEEALT DPYFNGLANS EREPIAQPIS KLEFEFEKRK LAKDDVRELI  420
YREILEYHPH MLQEYLRGGD QMSFMYPSGV DRFKRQFAHL EEGVSKGEKS SPQLRQNASL  480
PSHLRSRKLM EHFQKQKKEL ADRLNLRISQ VDAWFRNRRL RIVIERNLEL GGIAIDHCEI  540
ESGQMTKINS ARCDVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.2	1e-14	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G28390.1