PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G28510.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 277aa    MW: 28236 Da    PI: 6.9663
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G28510.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.93.9e-20154188135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nCgt +TplWR+gp+g+k+LCnaCG++y+k+++
  OGLUM05G28510.1 154 CANCGTASTPLWRNGPRGPKSLCNACGIRYKKEER 188
                      ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MLHHYYSGGA GHHQDVAAAG SPGDMASSTF SLFFPMSNGQ CWPPSTVEES AAYDDHSTVT  60
TSPSSPSSSS TGSVDCTLSL GTPSSRRAEP VAAAAPAANH GAPVPAHYPS LSAATVSWDA  120
TAESYYCGQQ GRPATGAAKC AAGAGHDALL DRRCANCGTA STPLWRNGPR GPKSLCNACG  180
IRYKKEERRA AATTTTADGA AGCGFITAQR GRGSTAAKAE PAVTTCGEET SPYVVGGGGG  240
EVADAAYLAW RLNVVPPAAT ATAFSVWPER ASLYHYN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.15e-23GATA family protein