PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G28570.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 112aa    MW: 12430.7 Da    PI: 10.0299
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G28570.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.6e-082570244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g WT+   +++ +a + + ++   +W+ Iar+mg  +++ +++ ++
  OGLUM05G28570.1 25 GGWTQRQNKQFECALAVYDKEtpdRWHNIARYMGGAKSADEVRRHF 70
                     56*****************99*************889*******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    
MASAAGSKQQ QAMMSLPSSR GGGGGGWTQR QNKQFECALA VYDKETPDRW HNIARYMGGA  60
KSADEVRRHF DHLVEDVARI ESGRVPFPRY SSSSSSSRGA DDGNRSRYLK YQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-30MYB_related family protein