PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G29000.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 513aa MW: 54578.3 Da PI: 6.1064

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G29000.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.4	5.4e-13	277	328	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e+I++L+ OGLUM05G29000.1 277 QRMTHIAVERNRRRQMNEYLRVLRSLMPGS---YVQRGDQASIIGGAIEFIRELE 328 79**************************...9****************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MGRKPACGDG PGRLLPLFRD HRLQAPHSHS HKGIEAAAAS SSFRPCALTQ GAAAAIFCAS 60 VAASPLLWSF ATAREHSSVQ FRNSYSLRLA TMHTYDVQQR SHLERFAALD EAPPPAPEET 120 VVTGGEMVDY MLGQPPPTTP GPQSQVSFDK LTFSDVLQFA DFGPKLALNQ PAASDNGGGG 180 GDDGDDDDDS YFLRFQSLPS LPAVPPPRGG AGAAHQVVDE QEGSKQTVDA GGVSESTTLV 240 QQADGGGGRA EKAGEQGKSG RRKRPRTVKT SEEVESQRMT HIAVERNRRR QMNEYLRVLR 300 SLMPGSYVQR GDQASIIGGA IEFIRELEQL IQCLESQKRR RLYGGDAPAP PARPVADGAV 360 LPAPMQQPPP ATPPFFPPSI PFPASSGAGD GTGAGVAKVA LDLDASGGGE VGGGVREEMA 420 ENKSCVADIE VRVVGVDAMI KILSRRRPGQ LIKTVAALEE MHMSILHTNI TTIDQTVLYS 480 FNVKIAGDAR FSAEDIAGAV HQILSFIDVN YTL

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MGRKPACGDG PGRLLPLFRD HRLQAPHSHS HKGIEAAAAS SSFRPCALTQ GAAAAIFCAS  60
VAASPLLWSF ATAREHSSVQ FRNSYSLRLA TMHTYDVQQR SHLERFAALD EAPPPAPEET  120
VVTGGEMVDY MLGQPPPTTP GPQSQVSFDK LTFSDVLQFA DFGPKLALNQ PAASDNGGGG  180
GDDGDDDDDS YFLRFQSLPS LPAVPPPRGG AGAAHQVVDE QEGSKQTVDA GGVSESTTLV  240
QQADGGGGRA EKAGEQGKSG RRKRPRTVKT SEEVESQRMT HIAVERNRRR QMNEYLRVLR  300
SLMPGSYVQR GDQASIIGGA IEFIRELEQL IQCLESQKRR RLYGGDAPAP PARPVADGAV  360
LPAPMQQPPP ATPPFFPPSI PFPASSGAGD GTGAGVAKVA LDLDASGGGE VGGGVREEMA  420
ENKSCVADIE VRVVGVDAMI KILSRRRPGQ LIKTVAALEE MHMSILHTNI TTIDQTVLYS  480
FNVKIAGDAR FSAEDIAGAV HQILSFIDVN YTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	278	289	RMTHIAVERNRR
2	338	342	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-54	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G29000.1