PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G29120.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 194aa MW: 21644 Da PI: 6.9641

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G29120.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	34.7	3.5e-11	6	44	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 e+ +C+C +s+C ++YC+Cf ++ +Cs++C+C++C N + OGLUM05G29120.1 6 ERPKCSCVQSSCTQLYCRCFRSRYFCSDNCNCSGCYNIK 44 5679********************************965 PP
2	TCR	45.9	1.1e-14	105	143	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k+ kgC+C+kskC k+YCeCf++ + C+ +CkC++C+N+ OGLUM05G29120.1 105 KHAKGCSCRKSKCSKLYCECFKNSVGCTAKCKCQECSNS 143 589***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MANNQERPKC SCVQSSCTQL YCRCFRSRYF CSDNCNCSGC YNIKYYEDAI EEISDMIQMK 60 NPNAFDPRII VSVQDATAAD PQSSTSAISD PKNTSDAMPG NEQRKHAKGC SCRKSKCSKL 120 YCECFKNSVG CTAKCKCQEC SNSFGVKNSE SSNKPDPDDK SATDGLTHEE TTTENITLPG 180 ETWNSDPNKR PRYF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04850.1	2e-21	CPP family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G29120.1