PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G29240.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 311aa    MW: 33021.9 Da    PI: 8.9421
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G29240.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.4e-13116160347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W+++E+ l++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qk+
  OGLUM05G29240.1 116 PWSEQEHRLFLAGLEKLGKGDWRGISRSFVTTRTPTQVASHAQKF 160
                      8******************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MARRCSGDYS TAGQRAGEEG GGGGGAGLRL FGVQLHAAAA SSPASYLHKS YSMDCLRLQV  60
SSPSSLQSSS SSPSPLTSSL LLSIDEGCER PAADGYLSDG PHGAAATMRE RKKGVPWSEQ  120
EHRLFLAGLE KLGKGDWRGI SRSFVTTRTP TQVASHAQKF FLRHNSAAKK TNNKRRSSLF  180
DMVQDCDSGG RSLASSDPAT RCNNNISASL SLQVSHHKSG DSAWPSSETP SVSEAQQAMY  240
IVSLISESFC LRYDSYPSTD RANSTSDKNV VAVSMAIGKQ SVVPEALYGA QALQSLICAK  300
KVSKCSVLNL C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-38MYB_related family protein