PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G00440.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 199aa    MW: 21585.6 Da    PI: 9.8329
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G00440.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.63.1e-2533138197
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesg......rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                      f+kv tpsdv+k++rlv+pk++ae++         ++ ++ l +ed +g       +W+++++y+ +s++yv+tkGW+++v++++L +gD+v F
  OGLUM06G00440.1  33 FEKVVTPSDVGKLNRLVVPKHYAEKYfplgpaARTSPAGTVLCFEDARGgggggdSTWRFRYSYWSSSQSYVITKGWSRYVRDKRLAAGDTVSF 126
                      99***************************999445557789*****9999******************************************** PP

                      EE-SSSEE..EEEEE CS
               B3  83 kldgrsefelvvkvf 97 
                          r +++l++  +
  OGLUM06G00440.1 127 C---RAGARLFIDCR 138
                      9...44555666655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MATIVAWESR NLQLQGGGGG HGGGGGERRE YMFEKVVTPS DVGKLNRLVV PKHYAEKYFP  60
LGPAARTSPA GTVLCFEDAR GGGGGGDSTW RFRYSYWSSS QSYVITKGWS RYVRDKRLAA  120
GDTVSFCRAG ARLFIDCRKR AASVSSSSLV PPALIKVQLP PSRPVVDEEE AACGRRCLRL  180
FGVDLQLRAD ASPALDLQL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.14e-41B3 family protein