PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G00450.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MIKC_MADS

Protein Properties

Length: 215aa MW: 24485.1 Da PI: 10.3689

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G00450.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.1	9.6e-28	19	68	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie++++rqvtfskRr+g+lKKA+ELSvLCdaeva+++fs++g+++ ++s OGLUM06G00450.1 19 RIEDTTRRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFAS 68 8*********************************************9986 PP
2	K-box	57.9	4.4e-20	92	179	9	96
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 e + ++++ +++ L ei++ + R+++G++Les+sl+eL+ Le q+eksl++iR +K++ l+++i++lq++ek l+een L OGLUM06G00450.1 92 PRELTVKNMKSQSETLAMEIDTVEAYTRKMQGKNLESCSLQELHGLEMQMEKSLSSIRLQKQKKLMDKISQLQQQEKILSEENALLLD 179 5667789****************************************************************************98865 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MAAAGGQQRR RGGRREMRRI EDTTRRQVTF SKRRKGLLKK ASELSVLCDA EVALLVFSPR 60 GRFFHFASAP SLEGTIDRYI SHTQEAPANK KPRELTVKNM KSQSETLAME IDTVEAYTRK 120 MQGKNLESCS LQELHGLEMQ MEKSLSSIRL QKQKKLMDKI SQLQQQEKIL SEENALLLDQ 180 GKVQHAPIGA PAREMNQNQH VQDIDVDTEL VIGRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	4e-46	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G00450.1