PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G01860.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BBR-BPC
Protein Properties Length: 331aa    MW: 36626.3 Da    PI: 10.1229
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G01860.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind405.85.5e-12413311301
        GAGA_bind   1 mdddgsre..rnkg.yye..........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkl 81 
                      md+ g+re  r+++ +y+           +++lk++++++l++++++rd++irer++al+ekkaa+aerdmaf+qrd+a+aern+a+verdn+l
  OGLUM06G01860.1   1 MDNLGHREngRQRPdQYKglhtqwmmpqTQRHLKDHQSMNLLALMNDRDNAIRERDHALAEKKAAIAERDMAFTQRDAAMAERNAAVVERDNAL 94 
                      9999999999****9***********74449*************************************************************** PP

        GAGA_bind  82 lalllvensla...salpvgvqvlsgtksidslqqlse.....pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkak. 165
                      +al+l++++     + +++ +++lsg+k+i++++qls+      ql+ds+++ +re++++ea+pi++a+ +a ++k++kk++++++p+++ +  
  OGLUM06G01860.1  95 AALELARTNGLnmnNGNGFPQGSLSGSKNIHHHDQLSHaqsspLQLADSPYDhAREMHISEAYPISTAPGSAGKAKRPKKNSSQASPLKRPSGv 188
                      ***99888765566889999***************888899999********9*************************************9998 PP

        GAGA_bind 166 .kkkkksekskkkvkkesader......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrg 252
                       +k+kk++ ++k+v ++++ ++      +k+e+k+++l+ln+v++Dest+P+P+CsCtG+lrqCYkWGnGGWqS+CCt++iS+yPLPv++++r+
  OGLUM06G01860.1 189 lRKTKKPSGDWKNVGMSGCGDDsahasvMKNEWKDQNLGLNQVAFDESTMPAPACSCTGKLRQCYKWGNGGWQSSCCTMNISMYPLPVMPNKRH 282
                      8888889**********99855589999****************************************************************** PP

        GAGA_bind 253 aRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      aR++grKmS+gaf+klL++LaaeG+dls+pvDLkdhWAkHGtn+++tir
  OGLUM06G01860.1 283 ARMGGRKMSGGAFTKLLSRLAAEGHDLSTPVDLKDHWAKHGTNRYITIR 331
                      ************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MDNLGHRENG RQRPDQYKGL HTQWMMPQTQ RHLKDHQSMN LLALMNDRDN AIRERDHALA  60
EKKAAIAERD MAFTQRDAAM AERNAAVVER DNALAALELA RTNGLNMNNG NGFPQGSLSG  120
SKNIHHHDQL SHAQSSPLQL ADSPYDHARE MHISEAYPIS TAPGSAGKAK RPKKNSSQAS  180
PLKRPSGVLR KTKKPSGDWK NVGMSGCGDD SAHASVMKNE WKDQNLGLNQ VAFDESTMPA  240
PACSCTGKLR QCYKWGNGGW QSSCCTMNIS MYPLPVMPNK RHARMGGRKM SGGAFTKLLS  300
RLAAEGHDLS TPVDLKDHWA KHGTNRYITI R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-101BBR-BPC family protein