PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G01950.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 393aa MW: 41840.7 Da PI: 7.0686

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G01950.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.8	8.7e-53	11	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd+++ ++ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk+ OGLUM06G01950.1 11 VPPGFRFHPTEEELLTYYLKKKVASERIDL-DVIRDVDLNKLEPWDIQErcRIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKA 103 69**************************.9***********953444443456******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s +++ +g++ktLvfykgrap+g+k+dW+mheyrl OGLUM06G01950.1 104 IYS-SSNRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139 .9999**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MSISVNGQSV VPPGFRFHPT EEELLTYYLK KKVASERIDL DVIRDVDLNK LEPWDIQERC 60 RIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYSSSNR IGMRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD DPSSASASVN LPSYYSSSSS SSSPMHGVAG DQGAQEEGWV 180 ICRVFKKKNL VHHGGGAAAA SHHAAAKLAA AAMEGSPSNC STVTVSDHVK AQMLHSSASD 240 DALDHILQYM GRSGCKQETK PAAMSASSAA AAAALEQHLS TPQYGKFMKL PPLEHVAGGV 300 GLLAAAGGGG EYCSAADASG IADWDTLDRL AASYELNGAL SDVASGKNMA GFFDVVDQPA 360 GAAAFSSGDG DLWSLARSVS SSLHADLTTM NNV

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MSISVNGQSV VPPGFRFHPT EEELLTYYLK KKVASERIDL DVIRDVDLNK LEPWDIQERC  60
RIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYSSSNR IGMRKTLVFY  120
KGRAPHGQKS DWIMHEYRLD DPSSASASVN LPSYYSSSSS SSSPMHGVAG DQGAQEEGWV  180
ICRVFKKKNL VHHGGGAAAA SHHAAAKLAA AAMEGSPSNC STVTVSDHVK AQMLHSSASD  240
DALDHILQYM GRSGCKQETK PAAMSASSAA AAAALEQHLS TPQYGKFMKL PPLEHVAGGV  300
GLLAAAGGGG EYCSAADASG IADWDTLDRL AASYELNGAL SDVASGKNMA GFFDVVDQPA  360
GAAAFSSGDG DLWSLARSVS SSLHADLTTM NNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	2e-94	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G01950.1