PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G02590.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 255aa MW: 26947.6 Da PI: 9.0308

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G02590.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.8	1e-19	92	146	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee+F+ +++++ +++ LAk+l+L rqV vWFqNrRa+ k OGLUM06G02590.1 92 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTK 146 788899***********************************************98 PP
2	HD-ZIP_I/II	125.2	2.9e-40	92	182	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+++n+rL+ke +eLr +lk OGLUM06G02590.1 92 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELR-ALK 182 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MERQGLDLGL SLGLGLTTAA TWPAAGFCLN SGMAEQEVIR RDDVVAAAAA EDERFACSPG 60 SPVSSGSGKR GSGSGSGDEV DDAGCDVGGG ARKKLRLSKD QAAVLEECFK THHTLTPKQK 120 VALAKSLNLR PRQVEVWFQN RRARTKLKQT EVDCEHLKRW CDQLADDNRR LHKELAELRA 180 LKATPTPPAA APPLTTLTMC LSCKRVANAG VPSPAAAMFP GHPQFLCGFR DHAGAASSSY 240 GGASSGLAKA VRAAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	149	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-45	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G02590.1