PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G03000.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 255aa    MW: 27787.5 Da    PI: 10.6798
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G03000.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.25.5e-1580139155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  ++ Aa+a++ a++k++g
  OGLUM06G03000.1  80 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEDAAARAYDLAALKYWG 139
                      789******************888855566447**********99*************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
METYGLVKDE LLHGIGGGQG RLYCEVKPTA APAVITAAGG GAKSVKRRKR EPSAAAMSAV  60
TVAGNGKEAG GSNAANKRSS RFRGVSRHRW TGRFEAHLWD KGTWNPTQKK KGKQVYLGAY  120
NEEDAAARAY DLAALKYWGP TTYTNFPVAD YEKELKLMQG VSKEEYLASI RRKSNGFSRG  180
VSKYRGVARC PAGTVPIRRP SANADPAAAG ELARRAFSFG HPHYKPSISN DGWWLVLTAQ  240
MGRTMVLGQM YQTGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14349KSVKRRK
2106114PTQKKKGKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-49AP2 family protein