PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G04560.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 184aa    MW: 19663.1 Da    PI: 11.1922
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G04560.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.9e-174493255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr +k +g+WvAeIr+p   +kr r++lg++ ta  Aa+a++ a  +l+g
  OGLUM06G04560.1 44 QYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVFYLRG 93
                     69*****99.**********9...336*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MDRREATVFL PPPPPPLTQP QPPQQPAAAV RAPVGGRGGG GGRQYRGVRM RKWGKWVAEI  60
REPNKRSRIW LGSYSTAVAA ARAYDTAVFY LRGRSARLNF PDQLDGAGGG GGSGGGAEDH  120
RELTAAAIRK KAAEVGARVD AQHSVVGAAA PVPLQPPQPP PPQRRRTKNP DLNREPTPDT  180
SDDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13542GGRGGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.12e-26ERF family protein