PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G05030.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 607aa MW: 66008.8 Da PI: 5.9757

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G05030.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.7	2.3e-12	463	507	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eE+ l+ + + +G g+Wk I++++ ++Rt+ q+ s+ qk+ OGLUM06G05030.1 463 IWTEEEHRLFMVGLRVFGRGDWKNISKHLVTTRTAAQVSSHAQKF 507 5******************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence
MVLGGAAMEE GAVAVNGGDG EVVNPDNADD DAVSDWDACV RRGDWRNISR YFVRSKTPEQ 60 ISMYADNYFH MMEIAAAMEA DGGDDDDGHH EINNNNNNLG GGQLHAVVGA VGHGPGAGHI 120 APATPSNNNA AATAVNNNVD TPFWVPLLYN PEIEQRMMEM QAQSQKAWDD QQMKMAEAAT 180 PKEEGAADKQ FLRGLRVYGR GEWKSISMNF VRSKTPVQVS SHAQKYFRRV ESAAADKQRY 240 SINDVGLNDD DDDAAAAMDG TNSYSNNNFG GWQSLAFAGG HLEPVSGGAA PGQGWTASEI 300 EEARSLITSP NNGGEGGDGE GNKQKHCGHI VMELHEWFPW KTIGQVIGLY MKLNAGKPMV 360 MHSLNKSDAN NSIGEVDHVS ALANGNPVRL EEHRPMLNNV GLVFDYPLEE MEMENQTDQE 420 LKMVVEEEVQ PKEGLVIKEK EAGVSKIHTN SQHVTPSIKR RVIWTEEEHR LFMVGLRVFG 480 RGDWKNISKH LVTTRTAAQV SSHAQKFFLK MEARGEAVPP PAKRRRRRIT GDQQAAAAEH 540 AAALRRRMPV PPPPFNPFLL PSLVAPVMHR LLPPGSQAAG AAASGSGGQG ASLPQMPWIN 600 GANGMGR

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence

MVLGGAAMEE GAVAVNGGDG EVVNPDNADD DAVSDWDACV RRGDWRNISR YFVRSKTPEQ  60
ISMYADNYFH MMEIAAAMEA DGGDDDDGHH EINNNNNNLG GGQLHAVVGA VGHGPGAGHI  120
APATPSNNNA AATAVNNNVD TPFWVPLLYN PEIEQRMMEM QAQSQKAWDD QQMKMAEAAT  180
PKEEGAADKQ FLRGLRVYGR GEWKSISMNF VRSKTPVQVS SHAQKYFRRV ESAAADKQRY  240
SINDVGLNDD DDDAAAAMDG TNSYSNNNFG GWQSLAFAGG HLEPVSGGAA PGQGWTASEI  300
EEARSLITSP NNGGEGGDGE GNKQKHCGHI VMELHEWFPW KTIGQVIGLY MKLNAGKPMV  360
MHSLNKSDAN NSIGEVDHVS ALANGNPVRL EEHRPMLNNV GLVFDYPLEE MEMENQTDQE  420
LKMVVEEEVQ PKEGLVIKEK EAGVSKIHTN SQHVTPSIKR RVIWTEEEHR LFMVGLRVFG  480
RGDWKNISKH LVTTRTAAQV SSHAQKFFLK MEARGEAVPP PAKRRRRRIT GDQQAAAAEH  540
AAALRRRMPV PPPPFNPFLL PSLVAPVMHR LLPPGSQAAG AAASGSGGQG ASLPQMPWIN  600
GANGMGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	523	528	KRRRRR
2	523	529	KRRRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	1e-17	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G05030.1