PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G05040.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 630aa MW: 68175.9 Da PI: 4.3043

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G05040.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.3	2.6e-11	188	233	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WTteE+ +++++ + +G g Wk+I+ + +t+ q+ s+ qky OGLUM06G05040.1 188 RFWTTEEHRQFLRGLRVYGRGEWKSISMNFVRSKTPVQVSSHAQKY 233 56***************************9***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence
MEWTAAEMDE ARSIVARLTN AYDSGSLVAG AGNGDTRHDR IVRELQAWLP WRTMDQLIGL 60 YIELMTEEPA AAQPQYFDAG AVIDPTFDFF NDHNNFLGMP PPPVQQADDH NMNNVVADAG 120 MNYYYGGGGA GGAMVFGGAP MGETVEQAAP PAPAPVPVVP VVMNRDDDEV NNQGGGRHLA 180 APTNTTRRFW TTEEHRQFLR GLRVYGRGEW KSISMNFVRS KTPVQVSSHA QKYFRRVESA 240 AADKQRYSIN DVGLNDDDDD DSAMDGTNIY SNNKFNNNFG GWQSLAFAGG HLEPVSGGAA 300 PGQVIAPASS SAAAMNSAAQ FWAPMLFNPQ IQQQFMQMQA QTQQAWNDQH MMMAAAPMEG 360 AIDTNFEPAG MEWTAAEMHE ARSIIARLTN AYDSSALVAG AGNGDTRHDR IVRELQAWFP 420 WRTMDQLIGL YIELMAEEPA AAQPQYFDAG AVVDPTFDFF NDHNNFLGMP PPPVQQADDH 480 AMNNAAPPVP APVAVAPVVM NRDDDEVNNQ GGGRHLVFAL SALLAGLALA IDEGFGMEWT 540 AAELAEARSV IARVSDAYNS GVGSSSSACD TKHDRIMREL QARFPSRTMV QVIDLYVNLT 600 VETAAQPQDA GSAGDAAPSS TLLLPAACPL

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence

MEWTAAEMDE ARSIVARLTN AYDSGSLVAG AGNGDTRHDR IVRELQAWLP WRTMDQLIGL  60
YIELMTEEPA AAQPQYFDAG AVIDPTFDFF NDHNNFLGMP PPPVQQADDH NMNNVVADAG  120
MNYYYGGGGA GGAMVFGGAP MGETVEQAAP PAPAPVPVVP VVMNRDDDEV NNQGGGRHLA  180
APTNTTRRFW TTEEHRQFLR GLRVYGRGEW KSISMNFVRS KTPVQVSSHA QKYFRRVESA  240
AADKQRYSIN DVGLNDDDDD DSAMDGTNIY SNNKFNNNFG GWQSLAFAGG HLEPVSGGAA  300
PGQVIAPASS SAAAMNSAAQ FWAPMLFNPQ IQQQFMQMQA QTQQAWNDQH MMMAAAPMEG  360
AIDTNFEPAG MEWTAAEMHE ARSIIARLTN AYDSSALVAG AGNGDTRHDR IVRELQAWFP  420
WRTMDQLIGL YIELMAEEPA AAQPQYFDAG AVVDPTFDFF NDHNNFLGMP PPPVQQADDH  480
AMNNAAPPVP APVAVAPVVM NRDDDEVNNQ GGGRHLVFAL SALLAGLALA IDEGFGMEWT  540
AAELAEARSV IARVSDAYNS GVGSSSSACD TKHDRIMREL QARFPSRTMV QVIDLYVNLT  600
VETAAQPQDA GSAGDAAPSS TLLLPAACPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11280.1	9e-21	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G05040.1