PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G05540.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 696aa    MW: 75995.7 Da    PI: 6.4229
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G05540.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like902.1e-28217270155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  OGLUM06G05540.1 217 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 270
                      79*******************.********************************8 PP
2Myb_DNA-binding38.72.4e-12219269148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e++ ++v av+qlG +   +k+I + m+ +++t++++ s++qky+
  OGLUM06G05540.1 219 RVVWSVELHRKFVAAVNQLGIDkaVPKRILELMNvEKLTRENVASHLQKYR 269
                      678********************************99*************7 PP
3Response_reg76.41.1e-25281361109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++ + +  
  OGLUM06G05540.1  28 VLAVDDDPVCLKVLETLLRRCQY-HVTSTNQAITALKLLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVMKGITH 119
                      799********************.***************99999********************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel++
  OGLUM06G05540.1 120 GACDYLLKPVRIEELRN 136
                      ***************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    
MLLGALRMEE RKGLMGRERD QFPVGMRVLA VDDDPVCLKV LETLLRRCQY HVTSTNQAIT  60
ALKLLRENRD MFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSVNGET KTVMKGITHG  120
ACDYLLKPVR IEELRNIWQH VVRRKFGNRE RNNLDFSKEC NKPQSADTDH GPYQPTCGSS  180
DQNGRSSRKR KELHGEDDDE GDDNDYQEND EPSAAKKPRV VWSVELHRKF VAAVNQLGID  240
KAVPKRILEL MNVEKLTREN VASHLQKYRL YLKRLSAVAS QQASIVAAFG GRDPSFLHMG  300
AFEGLQSYQP FAPSAALPSF NPHGLLTRTS AAAAFGLQEL AAPSSTIQTA TGNVTIGHCL  360
EENQQANLAQ GLTAAIGQPQ LQQNWIHQEG NGLSDVFSGS SLTNTLSSTL QRVPSSSLPP  420
QELLECKQAK VSMPPSIRIP PSSSALLERT LGVSTNLGDS SISQQGALPI DGGFSADRLP  480
LHSSFDGAVA TKLDTSLAAS QREIGQQGKF SVSMLVSPSD NLALAKNAKT GASSSGSTII  540
LPLDTARHSD YLQFGGASNS LQKMDGQKQD HIQSSNIIWS SMPSTQLPSD TQIHNTQNQR  600
LDSGSFNHNI GAHLADQTNA SASILPQMKF DTRISEEKMK QKNTYDLGSS KLQGGFNSSG  660
CNFDGLLNSI IKVEKDDLPF MDNELGCDLF PLGACI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-110ARR-B family protein