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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OGLUM06G06330.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | B3 | ||||||||
| Protein Properties | Length: 237aa MW: 27497 Da PI: 9.525 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 53 | 6.2e-17 | 139 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
f+k +++s+v+ +l+lp +f +++ + +++ t++l de+ +++ + ++++ l++GW++F a++L +gD +vF+l++r +f +v
OGLUM06G06330.1 139 FVKPMLQSHVTGGFWLSLPTHFSRKYL-P-KRDETIRLVDEEDDEFDTLY--LANKRG--LSGGWRGFSIAHKLVDGDCLVFQLIQRAKF--KV 224
89************************5.3.35669***************..555555..9************************98888..99 PP
EEE-S CS
B3 95 kvfrk 99
++r+
OGLUM06G06330.1 225 YIIRA 229
98886 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 237 aa Download sequence |
MIEAESQMAE AASYEEQRRR QVEANKRKLE ELRLHHLSAA VRESAAKPSP VKQRKRKARA 60 PPGAGEDAPL RRSGRVANLP EKPKYRDEFQ DFEKRIRRSY GGKRRDLSNR VYATDEQRDY 120 AINAAQELEE ELGSDYPIFV KPMLQSHVTG GFWLSLPTHF SRKYLPKRDE TIRLVDEEDD 180 EFDTLYLANK RGLSGGWRGF SIAHKLVDGD CLVFQLIQRA KFKVYIIRAS SYYETDD |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 54 | 84 | RKRKARAPPGAGEDAPLRRSGRVANLPEKPK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G42700.1 | 2e-62 | B3 family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OGLUM06G06330.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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