PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G06330.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 237aa    MW: 27497 Da    PI: 9.525
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G06330.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.2e-17139229199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +++s+v+   +l+lp +f +++  + +++ t++l de+  +++  +    ++++  l++GW++F  a++L +gD +vF+l++r +f  +v
  OGLUM06G06330.2 139 FVKPMLQSHVTGGFWLSLPTHFSRKYL-P-KRDETIRLVDEEDDEFDTLY--LANKRG--LSGGWRGFSIAHKLVDGDCLVFQLIQRAKF--KV 224
                      89************************5.3.35669***************..555555..9************************98888..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                       ++r+
  OGLUM06G06330.2 225 YIIRA 229
                      98886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MIEAESQMAE AASYEEQRRR QVEANKRKLE ELRLHHLSAA VRESAAKPSP VKQRKRKARA  60
PPGAGEDAPL RRSGRVANLP EKPKYRDEFQ DFEKRIRRSY GGKRRDLSNR VYATDEQRDY  120
AINAAQELEE ELGSDYPIFV KPMLQSHVTG GFWLSLPTHF SRKYLPKRDE TIRLVDEEDD  180
EFDTLYLANK RGLSGGWRGF SIAHKLVDGD CLVFQLIQRA KFKVYIIRAS SYYETDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15484RKRKARAPPGAGEDAPLRRSGRVANLPEKPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-62B3 family protein