PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G06520.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 212aa    MW: 22629.9 Da    PI: 4.5443
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G06520.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-181362255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr +k +g+Wv+eIr p++   r r++lg+++t+eeAa+a +aa  +l+g
  OGLUM06G06520.1 13 KYRGVRLRK-WGKWVSEIRLPNS---RERIWLGSYDTPEEAARAFDAAFVCLRG 62
                     8******99.**********933...5*********************999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MSSSSSSSAT ARKYRGVRLR KWGKWVSEIR LPNSRERIWL GSYDTPEEAA RAFDAAFVCL  60
RGGGAGGEAA GNGINFPDSP PAVARTSDPQ EVYAAAVSHA NNRPPPPPSA RATSSALPWE  120
EAPVVAAQEA AADMAPDVVV LPSSPVNVLA AAGSFEYWSQ QPLYSPTAAS LDLQRWMTAA  180
AAAEESIMED DDDEGTSDGL WSFHYSPTRS KW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.19e-31ERF family protein