PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G06540.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 183aa    MW: 20187.5 Da    PI: 4.5419
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G06540.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552.1e-171665255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr +  +g+WvAeIr p++   r+r++lg+++++e+Aa+a +aa  +l+g
  OGLUM06G06540.1 16 KYTGVRLRQ-WGKWVAEIRLPNS---RRRIWLGSYDSPEKAARAFDAAFICLRG 65
                     8*****998.**********933...5*********************999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MQANGTLPAP EKVMRKYTGV RLRQWGKWVA EIRLPNSRRR IWLGSYDSPE KAARAFDAAF  60
ICLRGGEAIA GLNFPESPPT VVARTSDPRE VLAYATSHAN RLSSDATIAQ EEAALLEEET  120
AEQFSDVVRA NAAPPPPPVQ VAGGSFDWSQ LPLYSPLTTP TAEHWEEDNV EATTSDNLWS  180
FDF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.13e-32ERF family protein