PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G06580.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 207aa    MW: 21830.4 Da    PI: 4.6034
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G06580.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75e-172978255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +ykGVr +  +g+W+AeIr ps+   r r++lg+++t+e+Aa+a +aa  +l+g
  OGLUM06G06580.1 29 KYKGVRLRQ-WGKWAAEIRLPSS---RERIWLGSYDTPEKAARAFDAAFICLRG 78
                     8*****998.**********965...4*********************999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MEPVSFMQKS AAAAADGGSA AQAAAERRKY KGVRLRQWGK WAAEIRLPSS RERIWLGSYD  60
TPEKAARAFD AAFICLRGVQ AIAGLNFPES PPPPTAARTG DLREVYAFAV SHANQPSAEA  120
APADIVVPAQ VATEESDGVV RGNAAPPPVQ VAAGSLDWSQ FMANPPPMYS PTATAGSQAM  180
WPVTAPAAEA DGEDDELATT CRWSFDA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.16e-32ERF family protein