PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G08330.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 204aa    MW: 22254.1 Da    PI: 5.3427
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G08330.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.2e-181363155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ykGVr +  +g+WvAeIr p++   r r++lg+++t+e+Aa+a +aa  +l+g
  OGLUM06G08330.1 13 KKYKGVRLRQ-WGKWVAEIRLPNS---RERVWLGSYDTPEKAARAFDAAFVCLRG 63
                     59*****998.**********933...5*********************999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MQTKNTAAPA PEKKYKGVRL RQWGKWVAEI RLPNSRERVW LGSYDTPEKA ARAFDAAFVC  60
LRGAGAADAA GLNFPDSPLP VVARTRDLRE VYAFAVSHAN RPPPVAGETA ATALAAMAAL  120
EHNEVRENIA PSSPLSAVQV AALPAGSFDW SQLMANSPPL YSPIVIGSHA YDDLAVWPTT  180
QPVEEFSEED NENEELKVYI LRQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.17e-32ERF family protein