PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G08350.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 355aa    MW: 39461.3 Da    PI: 4.3866
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G08350.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.23.3e-26958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien  nrqvtfskRrng++KKA+ELSvLCd+++a+++fs++g+l  +s
  OGLUM06G08350.2  9 KRIENIPNRQVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSGRLSHFS 58
                     79********************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    
MGRVKLQIKR IENIPNRQVT FSKRRNGLIK KAYELSVLCD IDIALLMFSP SGRLSHFSGR  60
RRIEDVLTRY INLPESDRGG YYLINMLTQL KCESDVTEDL TNTSSKAPVN SNIEELQQEI  120
RRCQHQMQLT EEQLRMFEPD PARSASMEDV EASEKFIAGI LSRVEERKRY LLCSMGSFDV  180
TASTSAMQHL YLPQQHQHGD ITGNGFGSDE VASWVSEGMP PTTSSVASIF AGTSDSMMSF  240
RDQAVYDTMR QDACVDQTVV PEMGMCHVDQ QNQSDDWQAY TSAEFLNALI PPTPFPLDDE  300
DTMGPMLASS PLLMPGIHDQ QPPEEDMATA GCSQAPANDG NGLYAAEDIA PVNVG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.19e-71MIKC_MADS family protein