PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G08790.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 748aa MW: 82537.9 Da PI: 4.9536

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G08790.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.4	1.8e-11	578	618	12	52
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + L+++F++++yps++++e LA++lgLt +qV+ WF R OGLUM06G08790.1 578 NQKLKAHFKEDPYPSRATKENLAQELGLTFNQVTKWFSSTR 618 589**********************************8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence
MDKTTTSDLV LDNDNIGSNA GSAQEPLTTN GKISGVRNRY KQTVKRGRKG SQISPSKTYP 60 LRSSHSNVRV LRSASKKKNE TPIVPTNDNT AVQRVAKKRK RSKPLRPAPS RVLRSTSEKK 120 NKAHNELLND GAGVQPAEKK RKVGRPPKGG TPKDDYLMIR KRVRYVLNRM NYEQSLIQAY 180 ASEGWKGQSL EKIRPEKELE RAKVEILRCK SRIREAFRNL DSLLSEGKLD ESMFDSAGEI 240 SSEDGDEGWL CPACDCKIDC IDVLNELQGV KLSIHDSWEK VFPEAASFLN GSKQIDASDL 300 PSDDSADNDY DPTLAQGHKV DEEKSSGEDG GEGLDSDDSS SEDSESSEKE KSKTSQNGRT 360 VDDLGLPSED SEDGDFDPAG PDSDKEQNDE SNSDQLDESD FTSDSDDFCA EIAKSCGQDE 420 ISGPSSSQIR TVDRTDGSGF DGEPNAENSN LAFMETELEQ DMVLPISSKR QVERLDYKKL 480 YNEAYGKASS DSSDDEEWYG NSTPEKGNLE DSETDSLAES PQGGKGFSRR APVRYHNNEH 540 TPQNVRPGGS VSDQQTEVLC SNSNGSTAKN RHFGPAINQK LKAHFKEDPY PSRATKENLA 600 QELGLTFNQV TKWFSSTRHY ARVAATKKEN NIENHTAENN NNTNTVDSIQ LRGSNDIVSV 660 DRNDMVSEER TGQSNLNEGT PLRSDTSCGQ SVAVTPMVHP ENQGNDSSSN VRTPNAKSAE 720 KLIPGLENSD EARRKAVQRE LRKMKTGR

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence

MDKTTTSDLV LDNDNIGSNA GSAQEPLTTN GKISGVRNRY KQTVKRGRKG SQISPSKTYP  60
LRSSHSNVRV LRSASKKKNE TPIVPTNDNT AVQRVAKKRK RSKPLRPAPS RVLRSTSEKK  120
NKAHNELLND GAGVQPAEKK RKVGRPPKGG TPKDDYLMIR KRVRYVLNRM NYEQSLIQAY  180
ASEGWKGQSL EKIRPEKELE RAKVEILRCK SRIREAFRNL DSLLSEGKLD ESMFDSAGEI  240
SSEDGDEGWL CPACDCKIDC IDVLNELQGV KLSIHDSWEK VFPEAASFLN GSKQIDASDL  300
PSDDSADNDY DPTLAQGHKV DEEKSSGEDG GEGLDSDDSS SEDSESSEKE KSKTSQNGRT  360
VDDLGLPSED SEDGDFDPAG PDSDKEQNDE SNSDQLDESD FTSDSDDFCA EIAKSCGQDE  420
ISGPSSSQIR TVDRTDGSGF DGEPNAENSN LAFMETELEQ DMVLPISSKR QVERLDYKKL  480
YNEAYGKASS DSSDDEEWYG NSTPEKGNLE DSETDSLAES PQGGKGFSRR APVRYHNNEH  540
TPQNVRPGGS VSDQQTEVLC SNSNGSTAKN RHFGPAINQK LKAHFKEDPY PSRATKENLA  600
QELGLTFNQV TKWFSSTRHY ARVAATKKEN NIENHTAENN NNTNTVDSIQ LRGSNDIVSV  660
DRNDMVSEER TGQSNLNEGT PLRSDTSCGQ SVAVTPMVHP ENQGNDSSSN VRTPNAKSAE  720
KLIPGLENSD EARRKAVQRE LRKMKTGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	102	KKRKRS
2	97	104	KKRKRSKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	4e-50	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G08790.1