PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G10250.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 173aa MW: 19603.2 Da PI: 11.4573

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G10250.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.6e-16	36	81	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd l ++ ++G+++W+++a+ m+ +R++ qc++rw+++l OGLUM06G10250.1 36 AWTPEEDAVLECLAMEHGSRHWRRVAAQMPRRRSPAQCRDRWRDHL 81 7******************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence
MDMELSSSSS STTVASSPAS SPPLGRCVLR FRLPPAWTPE EDAVLECLAM EHGSRHWRRV 60 AAQMPRRRSP AQCRDRWRDH LARDVFHRPF TAADDAELAR LCLRLDDDAG FAAGRRWKDV 120 SRAVYGRSSC AVKRRWRELR RSDAFLGALW RPRTTTTAPP ANAAITTTRD RLT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	9e-13	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G10250.1