PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G10780.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 489aa MW: 55153.3 Da PI: 11.7662

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G10780.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.3	1.9e-14	123	168	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd l ++ + G+++W+++a+ m+ +R++ qc++rw+++l OGLUM06G10780.1 123 AWTPEEDAALERLAVENGSRHWRRVAAQMPRKRSPAQCRDRWRDHL 168 7***************************99*********986 PP
2	Myb_DNA-binding	22.1	3.6e-07	176	220	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 ++T+ +d+ l ++v + Ggg +Wk I+r + gR+ ++k rw OGLUM06G10780.1 176 PFTAADDDELTRLVLRPGGGggdRWKDISRAVH-GRSSRSVKRRWM 220 79*****************************.*********7 PP
3	Myb_DNA-binding	46.7	7.2e-15	372	420	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT+eEd l ++ ++G+++W+++a+ m+ +R++ qc++rw+++l OGLUM06G10780.1 372 AWTPEEDAVLERLAMEHGSRHWRRVAAQMPrhrRRRSPAQCRDRWRDHL 420 7*********************************************986 PP
4	Myb_DNA-binding	23	1.9e-07	428	473	3	48
SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 ++T+++d l++++ +l gg +Wk I+r + gR+ +k rw+ ++ OGLUM06G10780.1 428 PFTADDDAELARLCLRLDGGdRWKDISRAVY-GRSSRAVKQRWRELR 473 89*************9999*****9.*********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MPRKRSPVQC RDRWRDHLAR DVFHRPYTAA DDDELTRLVL RPGGGGDRWK DISRAVHGRS 60 SRSVKRRWME IGTSDELLRK LAPPPSSSSN AVADDQCASA VTPSSAPPSG RCCVVLRIRL 120 PPAWTPEEDA ALERLAVENG SRHWRRVAAQ MPRKRSPAQC RDRWRDHLAR DVFHRPFTAA 180 DDDELTRLVL RPGGGGGDRW KDISRAVHGR SSRSVKRRWM EIGTSDELLR KLWHPRSSML 240 SPATVVDALP VGTLRLLWGR SRFTIPDVGP LAKPKPKVEV LLLAPHASMH IVVGASLFPR 300 PPQHAAQLAL GLCVILATPP PLTVVGVAYL GFIRVGARQL SSSSSAASVF ASSSATSPPL 360 GRCVVRIRLP PAWTPEEDAV LERLAMEHGS RHWRRVAAQM PRHRRRRSPA QCRDRWRDHL 420 ARDVFHRPFT ADDDAELARL CLRLDGGDRW KDISRAVYGR SSRAVKQRWR ELRKSDAFLG 480 KLWRRPLSH

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MPRKRSPVQC RDRWRDHLAR DVFHRPYTAA DDDELTRLVL RPGGGGDRWK DISRAVHGRS  60
SRSVKRRWME IGTSDELLRK LAPPPSSSSN AVADDQCASA VTPSSAPPSG RCCVVLRIRL  120
PPAWTPEEDA ALERLAVENG SRHWRRVAAQ MPRKRSPAQC RDRWRDHLAR DVFHRPFTAA  180
DDDELTRLVL RPGGGGGDRW KDISRAVHGR SSRSVKRRWM EIGTSDELLR KLWHPRSSML  240
SPATVVDALP VGTLRLLWGR SRFTIPDVGP LAKPKPKVEV LLLAPHASMH IVVGASLFPR  300
PPQHAAQLAL GLCVILATPP PLTVVGVAYL GFIRVGARQL SSSSSAASVF ASSSATSPPL  360
GRCVVRIRLP PAWTPEEDAV LERLAMEHGS RHWRRVAAQM PRHRRRRSPA QCRDRWRDHL  420
ARDVFHRPFT ADDDAELARL CLRLDGGDRW KDISRAVYGR SSRAVKQRWR ELRKSDAFLG  480
KLWRRPLSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	2e-17	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G10780.1