PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G11140.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 478aa MW: 52818.3 Da PI: 5.3554

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G11140.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.9	5e-33	118	257	1	128
NAM 1 lppGfrFhPtdeelvveyLkkk..vegkk...leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....s 80 lp+G++F+Ptd+el+++ L+k+ v +k +++ +i++v+ i++++P++Lp vk++ + +fF+++ k+y+tg rk+r+++ + OGLUM06G11140.1 118 LPRGVKFDPTDQELLWHLLAKHgkVGAKAhpfIDE--FIPTVEeddgICYTHPQKLP-GVKQDGSISHFFHRTFKAYNTGIRKRRKINtgdlaD 208 799**********99998862255555444233..2444422245******.677777888**************866334446 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+k+v++ +g++ g+kk++v+y + + k+ekt+Wvmh+y+l OGLUM06G11140.1 209 VRWHKTGKTKPVVV-DGKHLGCKKIMVLYmsTMKGGKPEKTNWVMHQYHL 257 67********.999*******6534666777*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MDAVQPSNAQ YKPRAPGLCA GVCVVSSPPP SPVRRLDLAL VGSLVGRGGL RLPAGGAGAA 60 MTGTSWIIDS HRIASKIKNA SGSVDASKHK WVSNPTKACP RCNHIIDNSD VVHQWPGLPR 120 GVKFDPTDQE LLWHLLAKHG KVGAKAHPFI DEFIPTVEED DGICYTHPQK LPGVKQDGSI 180 SHFFHRTFKA YNTGIRKRRK INTGDLADVR WHKTGKTKPV VVDGKHLGCK KIMVLYMSTM 240 KGGKPEKTNW VMHQYHLGTG EDEVEGQYVV SKLFFQQQFK PGEKNAQDLT SADALESIVA 300 EDLPNIPPLP LEEHVFTNQE LEVLEKSETI TDQGKETSEI NNEDNAVEDV AHMATEKPED 360 RDNPSSQDPK WWEGESQFLL DSQQLAENLA ICDEFLQSQS QTSCGGGDDE PDKIKPRLAV 420 YAQLPVEDLK KDLEECQRLD PSDGTNLELE NASEFRLSQI EFSQDSFTTA WAGGKVID

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MDAVQPSNAQ YKPRAPGLCA GVCVVSSPPP SPVRRLDLAL VGSLVGRGGL RLPAGGAGAA  60
MTGTSWIIDS HRIASKIKNA SGSVDASKHK WVSNPTKACP RCNHIIDNSD VVHQWPGLPR  120
GVKFDPTDQE LLWHLLAKHG KVGAKAHPFI DEFIPTVEED DGICYTHPQK LPGVKQDGSI  180
SHFFHRTFKA YNTGIRKRRK INTGDLADVR WHKTGKTKPV VVDGKHLGCK KIMVLYMSTM  240
KGGKPEKTNW VMHQYHLGTG EDEVEGQYVV SKLFFQQQFK PGEKNAQDLT SADALESIVA  300
EDLPNIPPLP LEEHVFTNQE LEVLEKSETI TDQGKETSEI NNEDNAVEDV AHMATEKPED  360
RDNPSSQDPK WWEGESQFLL DSQQLAENLA ICDEFLQSQS QTSCGGGDDE PDKIKPRLAV  420
YAQLPVEDLK KDLEECQRLD PSDGTNLELE NASEFRLSQI EFSQDSFTTA WAGGKVID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	1e-141	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G11140.1