PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G11910.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YB

Protein Properties

Length: 229aa MW: 24100 Da PI: 6.0836

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G11910.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	158.3	1.2e-49	14	108	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 vreqdr++Pianv+rim++vlP +akis+dake++qecvsefisfvt+ea+d+c+re+rkt++++dl+wa+ lGf+dyv pl++yl++ re e OGLUM06G11910.1 14 VREQDRLMPIANVIRIMRRVLPPHAKISDDAKEVIQECVSEFISFVTGEANDRCHREHRKTVTAEDLVWAMDRLGFDDYVPPLTAYLRRMREYE 107 69******************************************************************************************99 PP NF-YB 95 g 95 g OGLUM06G11910.1 108 G 108 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MAAEQPPPAA AAVVREQDRL MPIANVIRIM RRVLPPHAKI SDDAKEVIQE CVSEFISFVT 60 GEANDRCHRE HRKTVTAEDL VWAMDRLGFD DYVPPLTAYL RRMREYEGGG SGGGGRGAAA 120 APAVVPPPPP EDAFRYVQVH HPVYAAPGEP VQGYGYPVAM SSALPAPHVH VGVRGGGQHE 180 VFGGGPAPLA VYYGGAPYGE ASSRGGCSAG DEGSSSSSAS PARVGPNYE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	2e-52	NF-YB family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G11910.1