PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G12960.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 719aa MW: 82070.6 Da PI: 10.0458

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G12960.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.8	4.4e-07	504	544	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e++ + v++ G+ W + a+++g +++ ++k+ w+ OGLUM06G12960.1 504 KWTPEEYEKIRRHVEKNGTS-WISLAQELG--KSEIHLKDTWRR 544 8***************99.****8..9*****9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence
MWKRALGLDF RGSKAAPLAP LSRRPSPSPA IRRSSAVSQR RRTARRHPAP SRGSSLPGWS 60 PRARRTHSSS APRAVTPTMG GEGAERRSKK KEKGKRQEEK AESGSRGDGE AVKLDLATDF 120 PSNSMGKVAM DVEEAKEVHR RKKRKEKEKE KDHGKEKKNK VIADNIEEAC AEAEQAEASG 180 LKVEQHCSED VQGDMSKCGS EEDKSIKKDN KLMKKKKKKE RKVEMAEEGQ ILAGSTDENA 240 GLLHAEMGRG EKEQGKKSKK SKRKHEDGEP VADGSAGDEI MTNRDKKRRR KEHSVELKEG 300 DQVNISKKAV KIKGNKKRKN ESDKFNPDLS TDALTGEDKV GGDGKNDKRK KKNDTSTRRN 360 EVGRDDKNDK KKKKSKERNG GRKCEKEKAA QSKDKVRRVS FSDAVEVFSI NDGEDEDNGK 420 SAESEVVHGK RFTPEENATL MEAIMSYIEM KQLGENGLEM IRACSKHPEL KGCWAEIGKS 480 LPHRPLTAIY KRARILLYRS DERKWTPEEY EKIRRHVEKN GTSWISLAQE LGKSEIHLKD 540 TWRRIKPKNL KSVARFCISI KWKDSLQSQW TQDEYQNLFD LVNLDLRVKA HQEYDAGNRK 600 LRDNIAWEAI SDKLTTRNHK NCCLKWYYQL ASPLVQKGIW ADTDDYRLVE ALQNVDAVCV 660 EDIDWDNLLD HRSGEVCRQR WNEMVRYLGG HKEKPFIEQV EVLSKRYCPE MVDYREGEA

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence

MWKRALGLDF RGSKAAPLAP LSRRPSPSPA IRRSSAVSQR RRTARRHPAP SRGSSLPGWS  60
PRARRTHSSS APRAVTPTMG GEGAERRSKK KEKGKRQEEK AESGSRGDGE AVKLDLATDF  120
PSNSMGKVAM DVEEAKEVHR RKKRKEKEKE KDHGKEKKNK VIADNIEEAC AEAEQAEASG  180
LKVEQHCSED VQGDMSKCGS EEDKSIKKDN KLMKKKKKKE RKVEMAEEGQ ILAGSTDENA  240
GLLHAEMGRG EKEQGKKSKK SKRKHEDGEP VADGSAGDEI MTNRDKKRRR KEHSVELKEG  300
DQVNISKKAV KIKGNKKRKN ESDKFNPDLS TDALTGEDKV GGDGKNDKRK KKNDTSTRRN  360
EVGRDDKNDK KKKKSKERNG GRKCEKEKAA QSKDKVRRVS FSDAVEVFSI NDGEDEDNGK  420
SAESEVVHGK RFTPEENATL MEAIMSYIEM KQLGENGLEM IRACSKHPEL KGCWAEIGKS  480
LPHRPLTAIY KRARILLYRS DERKWTPEEY EKIRRHVEKN GTSWISLAQE LGKSEIHLKD  540
TWRRIKPKNL KSVARFCISI KWKDSLQSQW TQDEYQNLFD LVNLDLRVKA HQEYDAGNRK  600
LRDNIAWEAI SDKLTTRNHK NCCLKWYYQL ASPLVQKGIW ADTDDYRLVE ALQNVDAVCV  660
EDIDWDNLLD HRSGEVCRQR WNEMVRYLGG HKEKPFIEQV EVLSKRYCPE MVDYREGEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	146	RRKKRKE
2	140	147	RRKKRKEK
3	141	147	RRKKRKE
4	141	148	RRKKRKEK
5	214	222	KKKKKKERK
6	218	260	KKERKVEMAEEGQILAGSTDENAGLLHAEMGRGEKEQGKKSKK
7	286	328	KKERKVEMAEEGQILAGSTDENAGLLHAEMGRGEKEQGKKSKK
8	286	291	KKRRRK
9	286	311	KKRRRKEHSVELKEGDQVNISKKAVK
10	286	313	KKRRRKEHSVELKEGDQVNISKKAVKIK
11	287	329	KKERKVEMAEEGQILAGSTDENAGLLHAEMGRGEKEQGKKSKK
12	287	312	KKRRRKEHSVELKEGDQVNISKKAVK
13	287	314	KKRRRKEHSVELKEGDQVNISKKAVKIK
14	288	315	KKRRRKEHSVELKEGDQVNISKKAVKIK
15	348	373	KKRRRKEHSVELKEGDQVNISKKAVK
16	348	375	KKRRRKEHSVELKEGDQVNISKKAVKIK
17	349	376	KKRRRKEHSVELKEGDQVNISKKAVKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	5e-94	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G12960.1