PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G12960.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 719aa    MW: 82070.6 Da    PI: 10.0458
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G12960.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.4e-07504544346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE e++ + v++ G+  W + a+++g  +++ ++k+ w+ 
  OGLUM06G12960.2 504 KWTPEEYEKIRRHVEKNGTS-WISLAQELG--KSEIHLKDTWRR 544
                      8*****************99.********8..9*******9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    
MWKRALGLDF RGSKAAPLAP LSRRPSPSPA IRRSSAVSQR RRTARRHPAP SRGSSLPGWS  60
PRARRTHSSS APRAVTPTMG GEGAERRSKK KEKGKRQEEK AESGSRGDGE AVKLDLATDF  120
PSNSMGKVAM DVEEAKEVHR RKKRKEKEKE KDHGKEKKNK VIADNIEEAC AEAEQAEASG  180
LKVEQHCSED VQGDMSKCGS EEDKSIKKDN KLMKKKKKKE RKVEMAEEGQ ILAGSTDENA  240
GLLHAEMGRG EKEQGKKSKK SKRKHEDGEP VADGSAGDEI MTNRDKKRRR KEHSVELKEG  300
DQVNISKKAV KIKGNKKRKN ESDKFNPDLS TDALTGEDKV GGDGKNDKRK KKNDTSTRRN  360
EVGRDDKNDK KKKKSKERNG GRKCEKEKAA QSKDKVRRVS FSDAVEVFSI NDGEDEDNGK  420
SAESEVVHGK RFTPEENATL MEAIMSYIEM KQLGENGLEM IRACSKHPEL KGCWAEIGKS  480
LPHRPLTAIY KRARILLYRS DERKWTPEEY EKIRRHVEKN GTSWISLAQE LGKSEIHLKD  540
TWRRIKPKNL KSVARFCISI KWKDSLQSQW TQDEYQNLFD LVNLDLRVKA HQEYDAGNRK  600
LRDNIAWEAI SDKLTTRNHK NCCLKWYYQL ASPLVQKGIW ADTDDYRLVE ALQNVDAVCV  660
EDIDWDNLLD HRSGEVCRQR WNEMVRYLGG HKEKPFIEQV EVLSKRYCPE MVDYREGEA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146RRKKRKE
2140147RRKKRKEK
3141147RRKKRKE
4141148RRKKRKEK
5214222KKKKKKERK
6218260KKERKVEMAEEGQILAGSTDENAGLLHAEMGRGEKEQGKKSKK
7286328KKERKVEMAEEGQILAGSTDENAGLLHAEMGRGEKEQGKKSKK
8286291KKRRRK
9286311KKRRRKEHSVELKEGDQVNISKKAVK
10286313KKRRRKEHSVELKEGDQVNISKKAVKIK
11287329KKERKVEMAEEGQILAGSTDENAGLLHAEMGRGEKEQGKKSKK
12287312KKRRRKEHSVELKEGDQVNISKKAVK
13287314KKRRRKEHSVELKEGDQVNISKKAVKIK
14288315KKRRRKEHSVELKEGDQVNISKKAVKIK
15348373KKRRRKEHSVELKEGDQVNISKKAVK
16348375KKRRRKEHSVELKEGDQVNISKKAVKIK
17349376KKRRRKEHSVELKEGDQVNISKKAVKIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.15e-94MYB_related family protein