PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G12970.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 422aa MW: 46583.4 Da PI: 7.5739

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G12970.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	104	125	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+k+F++ ++ H+r+H OGLUM06G12970.1 104 ECQVCHKRFKNDKSMFGHLRSH 125 6*******************99 PP
2	zf-C2H2	11.6	0.00087	275	297	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C++ Fs++ L H+ H OGLUM06G12970.1 275 YMCKHCNEEFSTHQALGGHMAGH 297 89******************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MSGCSWLCSL VILQAVCSAC WQVAGANSLR LAVGQIGGVF VYLQDPSLMS RRARDELVDG 60 SCSGDEDLAD HGAWPQPGGG AGGDHEAEAD VDVDGDGGSA GDVECQVCHK RFKNDKSMFG 120 HLRSHPNRGY KGATPPLKMS STPSSSSPVI PAGSPPPQPP PSSSSSLRPV GDSNSSMPTP 180 GISLTTYEKL AACVMLTLRR RYDRDQRQLQ APPKLERAGA GDQLATNMVE GAEGSSRAIV 240 RDEHEARRRK KGKRKLKEPR EEERKVKKEK KRHPYMCKHC NEEFSTHQAL GGHMAGHHKE 300 KRILLKEKQR ERSLVLEKEP ERSHHLMEGK HPERGLILEK KQLERSSIVL KEKQPDRSLI 360 LEEEQPEVVY QDKIDQTINW QKTERNEGAS YLGGGSNTAP IAQEDSRPPF GFDLNVEAPE 420 QE

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MSGCSWLCSL VILQAVCSAC WQVAGANSLR LAVGQIGGVF VYLQDPSLMS RRARDELVDG  60
SCSGDEDLAD HGAWPQPGGG AGGDHEAEAD VDVDGDGGSA GDVECQVCHK RFKNDKSMFG  120
HLRSHPNRGY KGATPPLKMS STPSSSSPVI PAGSPPPQPP PSSSSSLRPV GDSNSSMPTP  180
GISLTTYEKL AACVMLTLRR RYDRDQRQLQ APPKLERAGA GDQLATNMVE GAEGSSRAIV  240
RDEHEARRRK KGKRKLKEPR EEERKVKKEK KRHPYMCKHC NEEFSTHQAL GGHMAGHHKE  300
KRILLKEKQR ERSLVLEKEP ERSHHLMEGK HPERGLILEK KQLERSSIVL KEKQPDRSLI  360
LEEEQPEVVY QDKIDQTINW QKTERNEGAS YLGGGSNTAP IAQEDSRPPF GFDLNVEAPE  420
QE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	248	256	RRKKGKRKL
2	249	257	RRKKGKRKL

Link Out ? help Back to Top
Ensembl	OGLUM06G12970.1