PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G14250.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

M-type_MADS

Protein Properties

Length: 238aa MW: 26964.1 Da PI: 10.2197

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G14250.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.6	1.4e-17	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 kri+n+ rqv fskRr ++KKA+EL + C+a+va+++ s+ gk++ + OGLUM06G14250.1 9 KRIKNEEARQVCFSKRRPSVFKKASELYTVCGAKVAMLVKSPAGKFFSF 57 79********************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MTKRKIEIKR IKNEEARQVC FSKRRPSVFK KASELYTVCG AKVAMLVKSP AGKFFSFGAP 60 SVGFVLSRFH ATTTSRKHSS MGVTIQHDNS ATIKLHELNQ QHIELQNQLQ AQNEKMKALQ 120 EVAKKESGGK VMGWLNSKVE DICQEDLEEF KMVLESLKCL TRGIINQLFQ NYAMFSNMMR 180 VQHCVTALPN QQFLPSSEDV KPMIHHVPSS SYGWNTSIDS KPNSSDAHVV GARRYFPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-23	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G14250.1