PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G17270.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 157aa    MW: 17729.4 Da    PI: 11.2713
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G17270.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.42.8e-211962245
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     rie+k +rqvtf+kRr+g++ KA+ELS+L+++ vav++fs+ ++
  OGLUM06G17270.1 19 RIEDKPRRQVTFTKRRAGLFRKASELSILTGTAVAVLVFSEANR 62
                     8***************************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
MVHPRGRPSK GRQAIEIRRI EDKPRRQVTF TKRRAGLFRK ASELSILTGT AVAVLVFSEA  60
NRPYALADPS SSLVDDAVLR SRCYAPAPGV HDCEPEALRR AADEAKVEVA RLRDVAGRRF  120
WWWWEATNVE ALGEAELPEF TRVLGRVRAA VVRRRAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-17M-type_MADS family protein