PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G19290.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 307aa    MW: 32319.3 Da    PI: 8.7102
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G19290.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind90.71.8e-28121382102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT..................... CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks..................... 74 
                      F+ k+y+++ed+ ++ +i w + +nsfvv d+  f++++Lp +Fkh+nf+SFvRQLn+Y    + ++ ++s++                     
  OGLUM06G19290.1  12 FVWKTYRMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYVSLVTPSSISSSHHtpplsalhimlpwilsgtqlk 105
                      9**********************************************************766555555554448999****9999999998887 PP

                      .....XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
     HSF_DNA-bind  75 .....kekiweFkhksFkkgkkellekikrkks 102
                           +++ weF+h sF +g+++ll++i r+ s
  OGLUM06G19290.1 106 gfrkvDPDRWEFAHASFLRGQTHLLRNIVRRGS 138
                      7765449***********************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MAAAAGGGAA PFVWKTYRMV EDPGTDGVIG WGKGNNSFVV ADPFVFSQTL LPAHFKHNNF  60
SSFVRQLNTY VSLVTPSSIS SSHHTPPLSA LHIMLPWILS GTQLKGFRKV DPDRWEFAHA  120
SFLRGQTHLL RNIVRRGSAA AGGGGGGKRR DASADGGGGG DEDMTMVATE VVRLKQEQRT  180
IDDRVAAMWR RVQETERRPK QMLAFLLKVV GDRDKLHRLV GGGGNGNGAA TAAAADNGFA  240
DAARGGCGEK RARLLLDGDN TGAFGPDAVD FAGFYTGADM FPDVAVDAAA AAGSAGCSFA  300
FGVDSGY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-49HSF family protein