PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G19330.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 227aa    MW: 23834.5 Da    PI: 4.3416
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G19330.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.58e-095281235
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgk 35
                      y+GVr +  +g+Wv+eIr+p++   + r++lg+
  OGLUM06G19330.1 52 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGT 81
                     69****998.**********843...6*****97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MPEYELAACS PASPLSSASS TSTPPSPGGE AAARCGEKRG RGGGGGGGRH PTYRGVRMRA  60
WGKWVSEIRE PRKKSRIWLG TQCLDPRGSW CARAAAMALY AAVPAPPSPP PPLMPPQASP  120
SEAARVHALV GQVDQDDDDD DELEEIVELP PIDELDAAAE LVFVSSGAST FHDDPAADQP  180
WYDQPAAWLQ DGGGGGIAVH DALGFELDHV WADGVVASGF GALLWNM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14149RGGGGGGGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.17e-17ERF family protein