PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G20200.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 576aa MW: 60806 Da PI: 7.9693

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G20200.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.2	9.7e-16	341	387	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+riN++f++Lr llP + p+ K +Ka+iL ++eY+ +L OGLUM06G20200.1 341 HMISERRRRERINDSFQTLRALLPLP---PDSKKDKAAILASTTEYMDKL 387 8899********************...***************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MDAIFALPPD ARARAMGRAA ARLPGCLYLC LWAPAAAIAG GVQPNHLFCL DAWIGGGGGV 60 GAGGGGGDRA LELFEAYRGA LCAAVSGCVP GWAYKEGAAC MELTEHDLAA SASLQVQQQF 120 YHETGTKMAV FMGCDSGEIE VGLSAASATA TAAVVGEMQQ SILEELLQMP PPPPSPSSSS 180 LLSLSVGSPE YSSLVRSMAT SVGASAAADP SPVHGGLLAP VYGEFPGSDD DAAMAQAMLA 240 VISTPAPPPP PWRPPRRRAR SSSSPRRATA FKAYNAALSP RARPRPGAPG QRMIKTGISL 300 LASVHMQTRS RELAAARQRD THAAPPPPPP PPPPSSSQLH HMISERRRRE RINDSFQTLR 360 ALLPLPPDSK KDKAAILAST TEYMDKLISQ VSELGEKNRQ LEAQLAARSG EAQWPAASGG 420 GGGESSSERV QVDVVIAGSS ASTDQPREVS IRVTVRAECD VSELVVAVLA RLREMGRFAV 480 NYKYKTNSVT VGKSQLTVHT EKYKVDASHG QKYLLMKLNK SAGDVCDETS LKEAVAKAVD 540 GGAAFFKFQR TPFMHSKNYD QSDDLEGEAK LLPLDS

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MDAIFALPPD ARARAMGRAA ARLPGCLYLC LWAPAAAIAG GVQPNHLFCL DAWIGGGGGV  60
GAGGGGGDRA LELFEAYRGA LCAAVSGCVP GWAYKEGAAC MELTEHDLAA SASLQVQQQF  120
YHETGTKMAV FMGCDSGEIE VGLSAASATA TAAVVGEMQQ SILEELLQMP PPPPSPSSSS  180
LLSLSVGSPE YSSLVRSMAT SVGASAAADP SPVHGGLLAP VYGEFPGSDD DAAMAQAMLA  240
VISTPAPPPP PWRPPRRRAR SSSSPRRATA FKAYNAALSP RARPRPGAPG QRMIKTGISL  300
LASVHMQTRS RELAAARQRD THAAPPPPPP PPPPSSSQLH HMISERRRRE RINDSFQTLR  360
ALLPLPPDSK KDKAAILAST TEYMDKLISQ VSELGEKNRQ LEAQLAARSG EAQWPAASGG  420
GGGESSSERV QVDVVIAGSS ASTDQPREVS IRVTVRAECD VSELVVAVLA RLREMGRFAV  480
NYKYKTNSVT VGKSQLTVHT EKYKVDASHG QKYLLMKLNK SAGDVCDETS LKEAVAKAVD  540
GGAAFFKFQR TPFMHSKNYD QSDDLEGEAK LLPLDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	261	PRRRARS
2	345	350	ERRRRE
3	346	373	RRRRERINDSFQTLRALLPLPPDSKKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	5e-18	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G20200.1