PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G20240.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GATA

Protein Properties

Length: 461aa MW: 48980.4 Da PI: 9.4935

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G20240.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.2	1.9e-17	272	305	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + OGLUM06G20240.2 272 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 305 *******************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MAGGEEEEEA HDWRRSRAAS PSARGSRRSV VWQYLLSTCQ QGVQRCSSDL DAPRKHPSLK 60 ISVQLLPLMS TIYMSQLSAT LPLMEGEHHH HHQDHHQGHF QAFSLQPKDP PVLFPFVISR 120 RSSSSSSPSD STTLSYGSDH HMTQQQHQHQ ALLEPQHMIG GSSAGIFATP FPTVESIRDD 180 MIERSQFDPY DTEKLQASCG LAKVVAGGKW SAVPAAKMKI TRKMGEPSSG VVTGGAATTV 240 APKKPRRRPA QAYEDHGHGG AMGQAFGVIR VCSDCNTTKT PLWRSGPCGP KSLCNACGIR 300 QRKARRAMMA SGLPASPNAA GPKAAAHSNV AAAAAAQPKV KKEKRADVDR SSLPFKKRCK 360 AIQVEDHQTP PAATNAAAAA AIEETAESTT VAPPPAPTTK GGTLVDSIGL SWSKTHATAA 420 ATASCSFRPS PVAPGFAAAV QDEITDAAML LMTLSCGLVR S

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MAGGEEEEEA HDWRRSRAAS PSARGSRRSV VWQYLLSTCQ QGVQRCSSDL DAPRKHPSLK  60
ISVQLLPLMS TIYMSQLSAT LPLMEGEHHH HHQDHHQGHF QAFSLQPKDP PVLFPFVISR  120
RSSSSSSPSD STTLSYGSDH HMTQQQHQHQ ALLEPQHMIG GSSAGIFATP FPTVESIRDD  180
MIERSQFDPY DTEKLQASCG LAKVVAGGKW SAVPAAKMKI TRKMGEPSSG VVTGGAATTV  240
APKKPRRRPA QAYEDHGHGG AMGQAFGVIR VCSDCNTTKT PLWRSGPCGP KSLCNACGIR  300
QRKARRAMMA SGLPASPNAA GPKAAAHSNV AAAAAAQPKV KKEKRADVDR SSLPFKKRCK  360
AIQVEDHQTP PAATNAAAAA AIEETAESTT VAPPPAPTTK GGTLVDSIGL SWSKTHATAA  420
ATASCSFRPS PVAPGFAAAV QDEITDAAML LMTLSCGLVR S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	249	PKKPRRRP
2	302	344	RKARRAMMASGLPASPNAAGPKAAAHSNVAAAAAAQPKVKKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56860.1	5e-19	GATA family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G20240.2