PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G21270.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 316aa MW: 35121.6 Da PI: 4.7244

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G21270.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.3	3.1e-09	248	295	6	53
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +++k qle+Le+++ +++ p+ +++ + + ++L+ + + WF rR OGLUM06G21270.1 248 RLKKVQLETLERVYSRTKRPTNTMISSIVQVTSLPRKTIVKWFEDRRE 295 67899*****************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence
MAAMVGAPLA VAAAAAAPGA RVFLARPLLR RSPRGVACAL RRRPSKYKNK IQNEEVVAED 60 DIGGGGEDDD DALEALFKQL EEDLKNDDLS VEDDDDGISE EDMARFEQEL AEAIGDIADA 120 DESAEGSSLG SEAYGNDEKT DEIKRPELKN WQLKRLARAL KIGRRKTSIK NLAGELGLDR 180 TLVIELLRNP PPKLLFMSDS LPDEDPSKPE IKEIEPSPVV DNADVTETKP HTELPVHVMC 240 AEWSSQKRLK KVQLETLERV YSRTKRPTNT MISSIVQVTS LPRKTIVKWF EDRREQDGVP 300 DHRVAFKRSL SETIAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	3e-60	HB-other family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G21270.1