PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G22930.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 411aa    MW: 45748.6 Da    PI: 9.4173
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G22930.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.12.4e-11241181395
                      TT-EE--HHH.HTT.............---.....--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3  13 sgrlvlpkkfaeeh.............ggkke...esktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr 87 
                      ++rl++p +fa++              +   e   +   + +  + g++W+v+l+  +++ +    +l++GW+e + a+gL eg  vv++l++r
  OGLUM06G22930.1  24 LHRLSVPGEFAARLddddatgvgeeeeE---EsgrRAAAVLVVGPLGKVWRVELR--RSPAGdgeAWLGGGWSELAAAHGLGEGWGVVLRLERR 112
                      589********99999999998765442...1444677899999**********5..54444447*************************9987 PP

                      SEE..EEE CS
               B3  88 sefelvvk 95 
                        +   ++
  OGLUM06G22930.1 113 GVA--SLR 118
                      666..444 PP
2B343.65.5e-14146235397
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      k l ++d      + +p kf+++h  +  +++++  ++  + g+ W+v+l  ++ +  ++l++GW  F  a++L eg +++F+++g++ f  +v
  OGLUM06G22930.1 146 KLLQQEDL---EKMKIPEKFVQQHltETYTNNHQNAIIVCPLGKFWRVEL--QREQPDVLLRDGWAPFLAAHDLSEGNILLFRYEGNMVF--TV 232
                      55533333...3478**********944445667899999**********..999999****************************9999..66 PP

                      EEE CS
               B3  95 kvf 97 
                       vf
  OGLUM06G22930.1 233 EVF 235
                      665 PP
3B3391.4e-12320400486
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      +++++++  s +l++  +f++++g+ +++ +tl++  ++  sW+v ++ + +  +y+ + GW++F+ +n++kegD ++F  ++
  OGLUM06G22930.1 320 KEMTAYSIHS-LLSVRGTFCSQIGLLEACAITLKISMKKKGSWRVAFK-TANTYGYINGPGWRKFCLENEVKEGDRLTFNAIE 400
                      4446666655.69**********************************5.5555579***********************9665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    
MPLSAGSLRR RPKFAAPLLS PACLHRLSVP GEFAARLDDD DATGVGEEEE EESGRRAAAV  60
LVVGPLGKVW RVELRRSPAG DGEAWLGGGW SELAAAHGLG EGWGVVLRLE RRGVASLRVF  120
DPGFCLARFC TPHAGMRTKD RPRFIKLLQQ EDLEKMKIPE KFVQQHLTET YTNNHQNAII  180
VCPLGKFWRV ELQREQPDVL LRDGWAPFLA AHDLSEGNIL LFRYEGNMVF TVEVFLQNGC  240
LKEYKTAALY LTDGTEGPSN APQQSAAKVG VSPVKRKRTR RIEGTCLEGP NRKSRASPIS  300
VKVEPHKKHV SIVSQNSFTK EMTAYSIHSL LSVRGTFCSQ IGLLEACAIT LKISMKKKGS  360
WRVAFKTANT YGYINGPGWR KFCLENEVKE GDRLTFNAIE TTVWHVVIVH C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.19e-14B3 family protein