PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G23280.5

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 2071aa MW: 227259 Da PI: 7.508

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G23280.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17	1e-05	1942	1963	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+ f +tG+C+ G+rCk +H++ OGLUM06G23280.5 1942 CPVFEATGECPQGSRCKLHHPK 1963 *****************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 2071 aa Download sequence
MDPPPPFDHP LHRRHYSDHH HFPPGGSGGS GGAASAAARS RYEYGGGGGG GGYEPHSHHQ 60 YHLPDHHHHH HHHPPPRVQH HHHHHHQQLP APTPPPPPPP PLPQHRLEPP PPHYGFPPRG 120 HPDAYSPPPY HDPSPHHHYH RHGGDDFLPA DEIRRVGGGH HHHHHHPHLQ QLLPWEEAEE 180 ERRRYGGATQ QLRLSPSGPR KRQRCAVHDA DVESTSSSGP PPRRQRQQPH PDYALDDSFV 240 DRNNAHPGYM VHEGFSIHSD SKVSRKIQMP TQMALPGSPH GTSAGYARRA PQKVAPSRVS 300 VWHRIEENPA MYEPSSPLPH MPKEVHVSPC KSNNVAPASK ELASVISVDC RGKSADGNDG 360 DSNTGTKKNP VKKNEKVLAS VLVKPPMEPK EKEVAAKKML KKPDKVQKNA VHSNIRSLVS 420 TPCPGAGAKK VKKIVIKKIV RKINGKGNQN STPVVSEKRD GIDANACEKE EGEITTSSFE 480 KDVISAHDPI AVSDTAGFGN AVNDQKQKNT NFTNPSGRNA ASANGSMEIP DPPNGSGSAH 540 PGKEEVLSPK NPVDNSNASL VVEPIEVLEK SGTEHPRKEH DMSSIGSGVN DAFADANNHT 600 QKEVGEMNVT VAINSVRVSD AREVPRCDDS SMEESKVPKD VDANNAVCMD GVASNCDTTE 660 VCGNEDARRE CGKKLIGIND EKAFLLNNSA RSSSTSDTCM TAVEGAQKKE GIILTGSSEK 720 SIGFLGDSVG THRTTEFGAS KDAPNEGDDM PSHPSEKDFM SLNSCGGLNY TEVSEKEDIQ 780 EKEDRVPMES IVACTSSGNE DIQVNEGRKP MELSEANAFS GSGDSQGKEC RIPMGSSETN 840 TSSVNHVNAS NEKDFSLSED TQKKESHRPI ESCENTTFEI MHHEEAPSTE EVITGVSLGR 900 KVAEGPTRSN ERCSGARGNS ATTLKFGLAC ATKDNQMEDL LNNRTALNET DDPLDAEDSP 960 VFVPPSSRNV ESTYASPLYD PMEDSTSDGI LNIGLGRNTT SKAAELLDLH RDHISSENDS 1020 LIHSRGTSSV SGNREQSVPT ALTLGSNIYF SSAETDDRPE ERHELVVEGQ QGLTVETTSK 1080 LDSPGKIEVL NGAGFISTGI QNWLSLPPSI NSMEMSGQFL NNGFTVSKGR LGLDQSMDDA 1140 TSMSQDHDIA QDMDQRGSED AFFSQDHSIR LCGSDLPHSH LLAPKESSMN GEDQSGIVLT 1200 GLHPSSSVNV LGHYGYQTDD IPVDNLNKLP SALESSDAMD ADQVSSQVCV NPDHTNDSNT 1260 ENAGVESNAK QDLLSSWIEA IVSEAKKEHP PCKSTPLTVG LPDKLLEPKD SDRKTLLETV 1320 VPSAVKSPQI NFASSTLQKV APKQVTLPSS SREPTRANQN ARHRTWHRGN IASSSSSLHA 1380 SQPLGLPPKL PPKKNDKAQN SYIRKGNALI RNPSNGNHPH SSTGHDTQNK LNKPVVRRSM 1440 NFVRTADTKD LANSNISVER PKTPPLPLHT KSSCPTTLLE PLSQTLQKQH GHEAEKEDLT 1500 GQPKSGVDNS SIKSAQKSEP SDPSKVVYVR PKSNQLVAAQ RQHPIDLVNS PTDKILSLQA 1560 PIASDLYLKK RKNQIVLSSC SPSDGLSTKE TLPAENSNSE EKKDLMIACS ISGIPGVKDR 1620 PQKALQTTNN VGRFSHVWTL NGQQPQRKGF MGSSHMNAFP RILPWKRKIF CKNFRSSHMS 1680 NVSSIRIVRK LLQTRKRDMI YTVSTDGFSL RKSGVLSVGG SSLKWSRSLE KRSQKVNKEA 1740 TLALAEVERR KREKRKRQSL HDKGDHQFES VTGNQLRNSR QSSSDLRKPS TCNEYVRVSK 1800 GNQLVRNPKN VIRMLASDKV RWSLHTVRSR LAKKQQYCQF FTRFGECKKP RGKCPYIHDR 1860 AKVTICTKFL KGLCSNTSCK LTHKVLPERM PDCSYFLRGL CTNIACPYRH VKVNLNAPVC 1920 EDFLKGYCAY GDECHKKHSY VCPVFEATGE CPQGSRCKLH HPKSKVKSKS RRPDFLQNSS 1980 WGRYFDASID HQDETRKVSL DEDEREKPQR VFSDGDLGFI SLDDDADEDV TALDASDDIP 2040 LMELDSGDLS AQTDNLDALI KPLRIMRTAR V

Sequence ? help Back to Top

Protein Sequence Length: 2071 aa Download sequence

MDPPPPFDHP LHRRHYSDHH HFPPGGSGGS GGAASAAARS RYEYGGGGGG GGYEPHSHHQ  60
YHLPDHHHHH HHHPPPRVQH HHHHHHQQLP APTPPPPPPP PLPQHRLEPP PPHYGFPPRG  120
HPDAYSPPPY HDPSPHHHYH RHGGDDFLPA DEIRRVGGGH HHHHHHPHLQ QLLPWEEAEE  180
ERRRYGGATQ QLRLSPSGPR KRQRCAVHDA DVESTSSSGP PPRRQRQQPH PDYALDDSFV  240
DRNNAHPGYM VHEGFSIHSD SKVSRKIQMP TQMALPGSPH GTSAGYARRA PQKVAPSRVS  300
VWHRIEENPA MYEPSSPLPH MPKEVHVSPC KSNNVAPASK ELASVISVDC RGKSADGNDG  360
DSNTGTKKNP VKKNEKVLAS VLVKPPMEPK EKEVAAKKML KKPDKVQKNA VHSNIRSLVS  420
TPCPGAGAKK VKKIVIKKIV RKINGKGNQN STPVVSEKRD GIDANACEKE EGEITTSSFE  480
KDVISAHDPI AVSDTAGFGN AVNDQKQKNT NFTNPSGRNA ASANGSMEIP DPPNGSGSAH  540
PGKEEVLSPK NPVDNSNASL VVEPIEVLEK SGTEHPRKEH DMSSIGSGVN DAFADANNHT  600
QKEVGEMNVT VAINSVRVSD AREVPRCDDS SMEESKVPKD VDANNAVCMD GVASNCDTTE  660
VCGNEDARRE CGKKLIGIND EKAFLLNNSA RSSSTSDTCM TAVEGAQKKE GIILTGSSEK  720
SIGFLGDSVG THRTTEFGAS KDAPNEGDDM PSHPSEKDFM SLNSCGGLNY TEVSEKEDIQ  780
EKEDRVPMES IVACTSSGNE DIQVNEGRKP MELSEANAFS GSGDSQGKEC RIPMGSSETN  840
TSSVNHVNAS NEKDFSLSED TQKKESHRPI ESCENTTFEI MHHEEAPSTE EVITGVSLGR  900
KVAEGPTRSN ERCSGARGNS ATTLKFGLAC ATKDNQMEDL LNNRTALNET DDPLDAEDSP  960
VFVPPSSRNV ESTYASPLYD PMEDSTSDGI LNIGLGRNTT SKAAELLDLH RDHISSENDS  1020
LIHSRGTSSV SGNREQSVPT ALTLGSNIYF SSAETDDRPE ERHELVVEGQ QGLTVETTSK  1080
LDSPGKIEVL NGAGFISTGI QNWLSLPPSI NSMEMSGQFL NNGFTVSKGR LGLDQSMDDA  1140
TSMSQDHDIA QDMDQRGSED AFFSQDHSIR LCGSDLPHSH LLAPKESSMN GEDQSGIVLT  1200
GLHPSSSVNV LGHYGYQTDD IPVDNLNKLP SALESSDAMD ADQVSSQVCV NPDHTNDSNT  1260
ENAGVESNAK QDLLSSWIEA IVSEAKKEHP PCKSTPLTVG LPDKLLEPKD SDRKTLLETV  1320
VPSAVKSPQI NFASSTLQKV APKQVTLPSS SREPTRANQN ARHRTWHRGN IASSSSSLHA  1380
SQPLGLPPKL PPKKNDKAQN SYIRKGNALI RNPSNGNHPH SSTGHDTQNK LNKPVVRRSM  1440
NFVRTADTKD LANSNISVER PKTPPLPLHT KSSCPTTLLE PLSQTLQKQH GHEAEKEDLT  1500
GQPKSGVDNS SIKSAQKSEP SDPSKVVYVR PKSNQLVAAQ RQHPIDLVNS PTDKILSLQA  1560
PIASDLYLKK RKNQIVLSSC SPSDGLSTKE TLPAENSNSE EKKDLMIACS ISGIPGVKDR  1620
PQKALQTTNN VGRFSHVWTL NGQQPQRKGF MGSSHMNAFP RILPWKRKIF CKNFRSSHMS  1680
NVSSIRIVRK LLQTRKRDMI YTVSTDGFSL RKSGVLSVGG SSLKWSRSLE KRSQKVNKEA  1740
TLALAEVERR KREKRKRQSL HDKGDHQFES VTGNQLRNSR QSSSDLRKPS TCNEYVRVSK  1800
GNQLVRNPKN VIRMLASDKV RWSLHTVRSR LAKKQQYCQF FTRFGECKKP RGKCPYIHDR  1860
AKVTICTKFL KGLCSNTSCK LTHKVLPERM PDCSYFLRGL CTNIACPYRH VKVNLNAPVC  1920
EDFLKGYCAY GDECHKKHSY VCPVFEATGE CPQGSRCKLH HPKSKVKSKS RRPDFLQNSS  1980
WGRYFDASID HQDETRKVSL DEDEREKPQR VFSDGDLGFI SLDDDADEDV TALDASDDIP  2040
LMELDSGDLS AQTDNLDALI KPLRIMRTAR V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1749	1754	RRKREK

Link Out ? help Back to Top
Ensembl	OGLUM06G23280.5