PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G25070.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 342aa MW: 37175.1 Da PI: 7.7296

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G25070.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	116.3	1.6e-36	65	142	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC +l key+r+h+vCe h+k+ v+v+g+ +rfCqqCsrfh+ sefD+ekrsCrrrL++hn+rrrk+q+ OGLUM06G25070.1 65 RCQVEGCGLELGGYKEYYRKHRVCEPHTKCLRVVVAGQDRRFCQQCSRFHAPSEFDQEKRSCRRRLSDHNARRRKPQT 142 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MECNPVSSST SSSLLWDWDA TASAEAPPPP GKRGGRDSSS ASASAKRGRS AAAGDAAAAA 60 AEAPRCQVEG CGLELGGYKE YYRKHRVCEP HTKCLRVVVA GQDRRFCQQC SRFHAPSEFD 120 QEKRSCRRRL SDHNARRRKP QTDVFAFGSG TLPRSLFDDR QQISFAWDNN APLNHANTTS 180 SSSWTSDLQL SQVMDISKRS RKAGADSANI RLSNALPTLC NDTNELLPIK GADASETASK 240 LDGALDVQRA LSLLSASSRG LTDPGHQTSS IIQFTNSNQN STLPSVPNEG NSNVPFWVDG 300 QHQAVEPQVF QFTMDTGNTV LPDLERIKPS YESSMFGLNQ IH

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MECNPVSSST SSSLLWDWDA TASAEAPPPP GKRGGRDSSS ASASAKRGRS AAAGDAAAAA  60
AEAPRCQVEG CGLELGGYKE YYRKHRVCEP HTKCLRVVVA GQDRRFCQQC SRFHAPSEFD  120
QEKRSCRRRL SDHNARRRKP QTDVFAFGSG TLPRSLFDDR QQISFAWDNN APLNHANTTS  180
SSSWTSDLQL SQVMDISKRS RKAGADSANI RLSNALPTLC NDTNELLPIK GADASETASK  240
LDGALDVQRA LSLLSASSRG LTDPGHQTSS IIQFTNSNQN STLPSVPNEG NSNVPFWVDG  300
QHQAVEPQVF QFTMDTGNTV LPDLERIKPS YESSMFGLNQ IH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.3	2e-40	SBP family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G25070.1