PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G25360.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MIKC_MADS

Protein Properties

Length: 205aa MW: 23545.4 Da PI: 4.785

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G25360.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	27.1	5.2e-09	9	29	1	21
S---SHHHHHHHHHHHHHHHH CS SRF-TF 1 krienksnrqvtfskRrngil 21 krie+ ++rqvtfskRr+g++ OGLUM06G25360.1 9 KRIEDATRRQVTFSKRRAGLM 29 79******************9 PP
2	K-box	60.3	8e-21	46	137	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++++ e++ e+++L++ei++L+ ++R+ GedL+s s + eL qL+ qLe+sl+++ ++K+el+ +q+e+++ + + ++e+n+ L +++ OGLUM06G25360.1 46 ETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVStVDELSQLQLQLESSLSNVHARKDELMSQQLEDMRCMHQTVHEQNNFLCRMMS 137 4556678999*************************984689*****************************************988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence
MGRGKIEMKR IEDATRRQVT FSKRRAGLME LFHRYEITTR NTRLQETNRD DEQMVMEITR 60 LRNEIDQLEA SLRRQTGEDL SSVSTVDELS QLQLQLESSL SNVHARKDEL MSQQLEDMRC 120 MHQTVHEQNN FLCRMMSENW QSPGSGEASA MEALTMLPPA AAATTAAEAF NCFFPEEEKG 180 VAASSTLLQL WPQPHDGDQP DLRLW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.2	6e-16	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G25360.1