PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G25500.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 333aa    MW: 35266.9 Da    PI: 7.5813
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G25500.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.27.7e-1376120147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  OGLUM06G25500.1  76 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 120
                      789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MSATPNPIDA SVVSAAAAVA GGGGGGDGGG GGGGKEKEKQ VVAAPLQPPM AVPAPAAAVG  60
EEARKVRKPY TITKSRESWT EPEHDKFLEA LQLFDRDWKK IEAYVGSKTV IQIRSHAQKY  120
FLKVQKNGTG EHLPPPRPKR KAAHPYPQKA SKNVSPAAIS QPPPLGEQGC VMSMDTSPVI  180
RNTNASAVVP SWDNSIAQPL SASRTQGTGA VATNNCSSSI ESPSTTWPTS EAVEQENMLR  240
PLRAMPDFAQ VYSFLGSIFD PDTSGHLQTL KAMDPIDVET VLLLMRNLSM NLTSPNFAAH  300
LSLLSSCNSG GDPIKSEGME NLGSPQSCHL PFM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.24e-83MYB_related family protein