PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G26560.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ARF

Protein Properties

Length: 698aa MW: 75686.1 Da PI: 7.7407

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G26560.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.9	4.4e-24	128	229	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+ ++ OGLUM06G26560.1 128 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--RT 217 89**************************996555555..8999*****************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++ l+v+++r+ OGLUM06G26560.1 218 ENGDLCVGIRRA 229 88999**997 PP
2	Auxin_resp	112.9	3.1e-37	290	373	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++++FevvY+Prast+eF+vk+ v++a+++++ +GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ OGLUM06G26560.1 290 AANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 373 688999****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MITFVDSALK ERERESDKCL DPQLWHACAG GMVQMPPVSS KVYYFPQGHA EHAQGHGPVE 60 FPGGRVPALV LCRVAGVRFM ADPDTDEVFA KIRLVPVRAN EQGYAGDADD GIGAAAAAAA 120 QEEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGVVWKF 180 RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFMRTENG DLCVGIRRAK KGGVGGPEFL 240 PPPPPPTPAA GGNYGGFSMF LRGDDDGNKM AAAARGKVRA RVRPEEVVEA ANLAVSGQPF 300 EVVYYPRAST PEFCVKAGAV RAAMRTQWFA GMRFKMAFET EDSSRISWFM GTVSAVQVAD 360 PIRWPNSPWR LLQVSWDEPD LLQNVKRVSP WLVELVSNMP AIHLAPFSPP RKKLCVPLYP 420 ELPIDGQFPT PMFHGNPLAR GVGPMCYFPD GTPAGIQGAR HAQFGISLSD LHLNKLQSSL 480 SPHGLHQLDH GMQPRIAAGL IIGHPAARDD ISCLLTIGSP QNNKKSDGKK APAQLMLFGK 540 PILTEQQISL GDAASVAVKK SSSDGNAENT VNKSNSDVSS PRSNQNGTTD NLSCGGVPLC 600 QDNKVLDVGL ETGHCKVFMQ SEDVGRTLDL SVVGSYEELY RRLADMFGIE KAELMSHVFY 660 RDAAGALKHT GDEPFSEFTK TARRLNILTD TSGDNLAR

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MITFVDSALK ERERESDKCL DPQLWHACAG GMVQMPPVSS KVYYFPQGHA EHAQGHGPVE  60
FPGGRVPALV LCRVAGVRFM ADPDTDEVFA KIRLVPVRAN EQGYAGDADD GIGAAAAAAA  120
QEEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGVVWKF  180
RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFMRTENG DLCVGIRRAK KGGVGGPEFL  240
PPPPPPTPAA GGNYGGFSMF LRGDDDGNKM AAAARGKVRA RVRPEEVVEA ANLAVSGQPF  300
EVVYYPRAST PEFCVKAGAV RAAMRTQWFA GMRFKMAFET EDSSRISWFM GTVSAVQVAD  360
PIRWPNSPWR LLQVSWDEPD LLQNVKRVSP WLVELVSNMP AIHLAPFSPP RKKLCVPLYP  420
ELPIDGQFPT PMFHGNPLAR GVGPMCYFPD GTPAGIQGAR HAQFGISLSD LHLNKLQSSL  480
SPHGLHQLDH GMQPRIAAGL IIGHPAARDD ISCLLTIGSP QNNKKSDGKK APAQLMLFGK  540
PILTEQQISL GDAASVAVKK SSSDGNAENT VNKSNSDVSS PRSNQNGTTD NLSCGGVPLC  600
QDNKVLDVGL ETGHCKVFMQ SEDVGRTLDL SVVGSYEELY RRLADMFGIE KAELMSHVFY  660
RDAAGALKHT GDEPFSEFTK TARRLNILTD TSGDNLAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G26560.1