PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G27650.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 341aa    MW: 36537.4 Da    PI: 4.7519
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G27650.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.62.6e-16258294135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg     Tp++Rrgpdg++tLCnaCGl+++ kg+
  OGLUM06G27650.1 258 CHHCGINAkaTPMMRRGPDGPRTLCNACGLMWANKGM 294
                      ****977777***********************9996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MSHHDGSKPY QPRRGPERPP PPAPADDAAA HVAPTVDHLA AVAAEAEAMA RFEEEHRALG  60
AEEEDEEEED ELEEEEEEME EDEDAQHHEG VGGEVAVPMD AEAAAQLDPH GGMLAASGAV  120
QPMASNQLTL SFQGEVYVFD SVSPDKVVQA VLLLLGGREL NPGLGSGASS SAPYSKRLNF  180
PHRVASLMRF REKRKERNFD KKIRYSVRKE VALRMQRNRG QFTSSKPKGD EATSELTASD  240
GSPNWGSVEG RPPSAAECHH CGINAKATPM MRRGPDGPRT LCNACGLMWA NKGMLRDLSK  300
APPTPIQVVA SVNDGNGSAA APTTEQEIPA PATANGHESS T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-72GATA family protein