PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G27960.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ARF

Protein Properties

Length: 1127aa MW: 124545 Da PI: 6.434

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G27960.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.7	9.6e-23	121	222	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++ OGLUM06G27960.1 121 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RD 210 99***************************954.4444.49********************************************..56 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++++l+++++r+ OGLUM06G27960.1 211 EKQQLLLGIRRA 222 88889**997 PP
2	Auxin_resp	118	7.8e-39	247	330	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+ +rr++Gt++g+sdldpvrW+nS+Wr+L+ OGLUM06G27960.1 247 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 330 79********************************9*******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1127 aa Download sequence
MMKQAQQQPP PPPASSAATT TTAMAAAAAA AVVGSGCEGE KTKAPAINSE LWHACAGPLV 60 SLPPAGSLVV YFPQGHSEQA DPETDEVYAQ MTLQPVTSYG KEALQLSELA LKQARPQTEF 120 FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LQARDLHDNV WTFRHIYRGQ 180 PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS SSVLSSDSMH 240 IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQISLGM RFRMMFETEE 300 LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI EPVAAPFFIC 360 PPPFFGAKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL SLVQWMNMNM 420 QQSSSFANTA MQSEYLRSLS NPNMQNLGAA DLSRQLCLQN QLLQQNNIQF NTPKLSQQMQ 480 PVNELAKAGI PLNQLGVSTK PQEQIHDASN LQRQQPSMNH MLPLSQTQTS LGQAQVLVQN 540 QMQQQHASST QGQQPATSQP LLLPQQQQQQ QQQQQQQQQQ QQQKLLQQQQ QQLLLQQQQQ 600 LSKMPAQLSS LANQQFQLTD QQLQLQLLQK LQQQQQSLLS QPAVTLAQLP LIQEQQKLLL 660 DMQQQLSNSQ TLSQQQMMPQ QSTKVPSQNT PLPLPVQQEP QQKLLQKQAM LADTSEAAVP 720 PTTSVNVIST TGSPLMTTGA THSVLTEEIP SCSTSPSTAN GNHLLQPILG RNKHCSMINT 780 EKVPQSAAPM SVPSSLEAVT ATPRMIKDSP KLNHNVKQSV VASKLANAGT GSQNYVNNPP 840 PTDYLETASS ATSVWLSQND GLLHQNFPMS NFNQPQMFKD APPDAEIHAA NTSNNALFGI 900 NGDGPLGFPI GLGTDDFLSN GIDAAKYENH ISTEIDNSYR IPKDAQQEIS SSMVSQSFGA 960 SDMAFNSIDS TINDGGFLNR SSWPPAAPLK RMRTFTKVYK RGAVGRSIDM SQFSGYDELK 1020 HALARMFSIE GQLEERQRIG WKLVYKDHED DILLLGDDPW EEFVGCVKCI RILSPQEVQQ 1080 MSLEGCDLGN NIPPNQACSS SDGGNAWRAR CDQNSGNPSN GSYEQFE

Sequence ? help Back to Top

Protein Sequence Length: 1127 aa Download sequence

MMKQAQQQPP PPPASSAATT TTAMAAAAAA AVVGSGCEGE KTKAPAINSE LWHACAGPLV  60
SLPPAGSLVV YFPQGHSEQA DPETDEVYAQ MTLQPVTSYG KEALQLSELA LKQARPQTEF  120
FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LQARDLHDNV WTFRHIYRGQ  180
PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS SSVLSSDSMH  240
IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQISLGM RFRMMFETEE  300
LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI EPVAAPFFIC  360
PPPFFGAKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL SLVQWMNMNM  420
QQSSSFANTA MQSEYLRSLS NPNMQNLGAA DLSRQLCLQN QLLQQNNIQF NTPKLSQQMQ  480
PVNELAKAGI PLNQLGVSTK PQEQIHDASN LQRQQPSMNH MLPLSQTQTS LGQAQVLVQN  540
QMQQQHASST QGQQPATSQP LLLPQQQQQQ QQQQQQQQQQ QQQKLLQQQQ QQLLLQQQQQ  600
LSKMPAQLSS LANQQFQLTD QQLQLQLLQK LQQQQQSLLS QPAVTLAQLP LIQEQQKLLL  660
DMQQQLSNSQ TLSQQQMMPQ QSTKVPSQNT PLPLPVQQEP QQKLLQKQAM LADTSEAAVP  720
PTTSVNVIST TGSPLMTTGA THSVLTEEIP SCSTSPSTAN GNHLLQPILG RNKHCSMINT  780
EKVPQSAAPM SVPSSLEAVT ATPRMIKDSP KLNHNVKQSV VASKLANAGT GSQNYVNNPP  840
PTDYLETASS ATSVWLSQND GLLHQNFPMS NFNQPQMFKD APPDAEIHAA NTSNNALFGI  900
NGDGPLGFPI GLGTDDFLSN GIDAAKYENH ISTEIDNSYR IPKDAQQEIS SSMVSQSFGA  960
SDMAFNSIDS TINDGGFLNR SSWPPAAPLK RMRTFTKVYK RGAVGRSIDM SQFSGYDELK  1020
HALARMFSIE GQLEERQRIG WKLVYKDHED DILLLGDDPW EEFVGCVKCI RILSPQEVQQ  1080
MSLEGCDLGN NIPPNQACSS SDGGNAWRAR CDQNSGNPSN GSYEQFE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G27960.1