PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G28660.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MIKC_MADS

Protein Properties

Length: 200aa MW: 22159 Da PI: 7.0583

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G28660.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.8	6.7e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvt+skRr+gi+KKA EL vLCda+va+i+fsstgk +e++s OGLUM06G28660.1 9 KRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCS 59 79***********************************************96 PP
2	K-box	33.5	1.7e-12	83	140	36	98
K-box 36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++GedL+ L++ eL+ Leq+++ +lk ++++++q+e+ +kk k e+ k+L+++l OGLUM06G28660.1 83 QQRMGEDLDGLEFDELRGLEQNVDAALK-----EYHVITTQTETYKKKVKHSYEAYKTLQQEL 140 699**********************7.....59**********************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence
MGRGKIEIKR IENATNRQVT YSKRRTGIMK KARELTVLCD AQVAIIMFSS TGKYHEFCSP 60 STDIKGIFDR YQQAIGTSLW IEQQRMGEDL DGLEFDELRG LEQNVDAALK EYHVITTQTE 120 TYKKKVKHSY EAYKTLQQEL GLREEPAFGF VDNTGGGWDG GAGAGAGAGA AADMFAFRVV 180 PSQPNLHGMA YGGNHDLRLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	2e-45	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G28660.1