PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G29220.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 318aa MW: 34766.5 Da PI: 4.6497

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G29220.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.5	1.8e-11	152	194	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L OGLUM06G29220.1 152 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 194 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MELDEQAFLE ELFSLRRDAW EYNAMGDFFS PACAAMDGFQ ERHQSTTTVS VLPTFTASYE 60 QPPPAPAAGF DCLSEVYGNA AAAFGPNAGG GGGDMGFLDV VEPKASMVVD GGGLGVCKVE 120 PGLQAEGGFS AAAAAPASKK KRVEGMPSKN LMAERRRRKR LNDRLSMLRS VVPKISKMDR 180 TSILGDTIDY MKELLERIRQ LQEEIEEQQQ QETPGVLSVF RELNPNEMLA RNTPKFDVER 240 KEGGDTRVEI YCAAKPGLLL STVSTLETLG LDIQQCVVSC FNDFGMHASC SEMQRERMSA 300 DMIKQELFKN AGYGGGCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	160	KKKRVEGMPSKNLMAERRRRKR
2	140	161	KKKRVEGMPSKNLMAERRRRKR
3	154	161	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	1e-50	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G29220.1